View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11361_low_4 (Length: 409)
Name: NF11361_low_4
Description: NF11361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11361_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 331
Target Start/End: Complemental strand, 19504681 - 19504360
Alignment:
| Q |
8 |
aagcagagacaatctatttaatggtgcaaactaaacgcacccgttgcagtattaagttgagcttggttctaggttaatcttacgtgctagtagagaccta |
107 |
Q |
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| T |
19504681 |
aagctgagacaatctatttaattgtgcaaactaaacgcacccgttgcagtattaagttgagcttggttctaggttaatcttacgtgctagtaga--ccta |
19504584 |
T |
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| Q |
108 |
ccatattttatttaattggttctaggttaatatcacattcatgcaaccacattaaattgcgaaaaatagtttgtcagaagtgggcctgataactatctta |
207 |
Q |
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| T |
19504583 |
ccatattttatttaattggttctaggttaatatcacattcatgcaaccacattgaattgcgaaaaatagtttgtcagaagtgggcctaataactatctta |
19504484 |
T |
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| Q |
208 |
agatgcaaccacttttcttgtacacttgtagatattttcatctaagtaaaacatttctaaatttgttggatataaatataggcaaatatcagatgattgt |
307 |
Q |
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| T |
19504483 |
agatgcaaccacttttcttgtacacttgtagatattttcatctaagtaaaacatttctaaatttgttggatataaatataggcaaatatcagatgattgc |
19504384 |
T |
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| Q |
308 |
tgtttacctatattgctcaagctc |
331 |
Q |
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| T |
19504383 |
tgtttacctatattgctcaagctc |
19504360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 392
Target Start/End: Complemental strand, 19504338 - 19504299
Alignment:
| Q |
353 |
gcctaacaaaacctagaatccgagagatgctagtggaaaa |
392 |
Q |
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| T |
19504338 |
gcctaacaaaacctagaatccgagagatgctagtggaaaa |
19504299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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