View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11361_low_5 (Length: 374)

Name: NF11361_low_5
Description: NF11361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11361_low_5
NF11361_low_5
[»] chr4 (7 HSPs)
chr4 (16-365)||(19512808-19513156)
chr4 (16-90)||(24752420-24752494)
chr4 (16-90)||(13883779-13883853)
chr4 (16-90)||(9564443-9564516)
chr4 (25-90)||(23658883-23658946)
chr4 (16-59)||(14646304-14646347)
chr4 (16-55)||(19509396-19509435)
[»] chr1 (2 HSPs)
chr1 (16-90)||(9131155-9131229)
chr1 (15-90)||(18513286-18513360)
[»] chr3 (5 HSPs)
chr3 (15-90)||(6460375-6460451)
chr3 (27-90)||(30992782-30992845)
chr3 (16-90)||(3261853-3261929)
chr3 (16-59)||(3291178-3291221)
chr3 (16-90)||(15776838-15776911)
[»] chr7 (1 HSPs)
chr7 (16-65)||(11315961-11316012)
[»] scaffold0088 (1 HSPs)
scaffold0088 (16-59)||(35028-35071)
[»] chr5 (3 HSPs)
chr5 (16-59)||(32040137-32040180)
chr5 (16-90)||(26659085-26659158)
chr5 (16-90)||(26930676-26930749)
[»] chr8 (3 HSPs)
chr8 (19-59)||(40391937-40391977)
chr8 (16-90)||(14993495-14993568)
chr8 (17-59)||(15113753-15113795)
[»] chr6 (1 HSPs)
chr6 (16-90)||(19566375-19566449)
[»] chr2 (5 HSPs)
chr2 (16-59)||(16094076-16094119)
chr2 (16-90)||(31509263-31509336)
chr2 (16-59)||(32623096-32623139)
chr2 (106-168)||(5007058-5007120)
chr2 (15-52)||(5008086-5008123)
[»] scaffold0005 (1 HSPs)
scaffold0005 (16-59)||(170943-170986)
[»] scaffold0578 (2 HSPs)
scaffold0578 (106-168)||(4558-4620)
scaffold0578 (15-52)||(3555-3592)
[»] scaffold0043 (1 HSPs)
scaffold0043 (15-47)||(66446-66478)


Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 19513156 - 19512808
Alignment:
Q  16 caatgtctctatcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataacaagggaacccacttactcatcatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19513156 caatgtctctatcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataacaagggaacccacttactcatcatt 19513057  T
Q  116 gatcacaaaattgacacatcaattgcacgaaattcatttaaaaacagaaacaagtttaatacatcaattaataacacctataaccctataattcacaaaa 215  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  19513056 gatcacaaaattgacacatcaattgaacgaaattcatttaaaaacagaaacaagtttaatacatcaattaataatacctataactctataattcacaaaa 19512957  T
Q  216 ataaaggagagaaagaaactaggataaggacccctatatgtgttcataacacccgctatagtaaccaatcttacccctttacctcgaattcgctgaattg 315  Q
    |||| ||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19512956 ataagggagagaaagaaactaggataaggacccct-cacgtgttcataacacccgctatagtaaccaatcttacccctttacctcgaattcactgaattg 19512858  T
Q  316 gtgttggaattctgatggtgaatcctattctcttgctctcctttgcttct 365  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  19512857 gtgttggaattttgatggtgaatcctattctcttgctctcctttgtttct 19512808  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 24752420 - 24752494
Alignment:
Q  16 caatgtctctatcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 90  Q
    |||||| |||||||||||||||||||||||| ||| |||||||||||| || ||||||| |||||||||||||||    
T  24752420 caatgtttctatcccaattaactaaataaccccactcaaacatgccaataactgatttaattcaaataaaaataa 24752494  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 13883853 - 13883779
Alignment:
Q  16 caatgtctctatcccaattaact-aaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 90  Q
    ||||||||||||||||||||||| ||| || | ||||||||||||||||||| | ||||| ||| |||||||||||    
T  13883853 caatgtctctatcccaattaactaaaagaaacccacccaaacatgccaaaaactaatttaattc-aataaaaataa 13883779  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 9564516 - 9564443
Alignment:
Q  16 caatgtctctatcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 90  Q
    ||||||||||||||||||| |||||| |||| ||||||||||||   ||||  |||||| |||||||||||||||    
T  9564516 caatgtctctatcccaatttactaaacaaccccacccaaacatg-ttaaaacggatttaattcaaataaaaataa 9564443  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 23658946 - 23658883
Alignment:
Q  25 tatcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 90  Q
    |||||||||||||||| ||| | ||||||||||||||||||| ||||||| ||||||||| |||||    
T  23658946 tatcccaattaactaa-taatc-cacccaaacatgccaaaaactgatttaattcaaataacaataa 23658883  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 14646304 - 14646347
Alignment:
Q  16 caatgtctctatcccaattaactaaataacctcacccaaacatg 59  Q
    |||||||||||||||||||||||||| |||||  ||||||||||    
T  14646304 caatgtctctatcccaattaactaaacaacctgtcccaaacatg 14646347  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 19509435 - 19509396
Alignment:
Q  16 caatgtctctatcccaattaactaaataacctcacccaaa 55  Q
    |||||||| |||||||||||||||||||||| ||||||||    
T  19509435 caatgtctttatcccaattaactaaataaccacacccaaa 19509396  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 9131229 - 9131155
Alignment:
Q  16 caatgtctctatcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 90  Q
    |||||||||||||||||||||| |||||| | ||| |||||||||||||||||||||||  ||||||||||||||    
T  9131229 caatgtctctatcccaattaacaaaataatcccactcaaacatgccaaaaattgatttaaatcaaataaaaataa 9131155  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 18513360 - 18513286
Alignment:
Q  15 tcaatgtctctatcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 90  Q
    ||||||| ||||||||||||||||||| ||| |||||||||||||  ||||  | ||||| |||||||||||||||    
T  18513360 tcaatgtgtctatcccaattaactaaacaacatcacccaaacatgttaaaacat-atttaattcaaataaaaataa 18513286  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 6460375 - 6460451
Alignment:
Q  15 tcaatgtctctat-cccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 90  Q
    ||||||||||| | ||||||||||||||||| ||||| ||||||||||||||| |||||||  ||||||||||||||    
T  6460375 tcaatgtctcttttcccaattaactaaataatctcactcaaacatgccaaaaactgatttaaatcaaataaaaataa 6460451  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 30992845 - 30992782
Alignment:
Q  27 tcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 90  Q
    ||||||||| ||||| |||||||||||||||||||||||| | ||||| |||||||||||||||    
T  30992845 tcccaattatctaaacaacctcacccaaacatgccaaaaactaatttaattcaaataaaaataa 30992782  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 3261929 - 3261853
Alignment:
Q  16 caatgtctctatcccaattaactaaataa--cctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 90  Q
    |||||||||||||||||||||||||| ||  |  ||||||||||||||||||| | ||||| |||||||||||||||    
T  3261929 caatgtctctatcccaattaactaaaaaaaactccacccaaacatgccaaaaactaatttaattcaaataaaaataa 3261853  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 3291178 - 3291221
Alignment:
Q  16 caatgtctctatcccaattaactaaataacctcacccaaacatg 59  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  3291178 caatgtctctatcccaattaactaaacaacctcacccaaacatg 3291221  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 15776911 - 15776838
Alignment:
Q  16 caatgtctctatcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 90  Q
    ||||| |||||||||||||||||||| |||||||||||||||||   ||||  |||||| |||||||||||||||    
T  15776911 caatggctctatcccaattaactaaacaacctcacccaaacatg-ttaaaacggatttaattcaaataaaaataa 15776838  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 11315961 - 11316012
Alignment:
Q  16 caatgtctctatcccaattaactaaat--aacctcacccaaacatgccaaaa 65  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  11315961 caatgtctctatcccaattaactaaataaaacctcacccaaacatgccaaaa 11316012  T

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Target: scaffold0088 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 35071 - 35028
Alignment:
Q  16 caatgtctctatcccaattaactaaataacctcacccaaacatg 59  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  35071 caatgtctctatcccaattaactaaacaacctcacccaaacatg 35028  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 32040137 - 32040180
Alignment:
Q  16 caatgtctctatcccaattaactaaataacctcacccaaacatg 59  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  32040137 caatgtctctatcccaattaactaaacaacctcacccaaacatg 32040180  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 26659085 - 26659158
Alignment:
Q  16 caatgtctctatcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 90  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||   ||||  |||||| |||||||||||||||    
T  26659085 caatgtctctatcccaattcactaaacaacctcactcaaacatg-ttaaaacggatttaattcaaataaaaataa 26659158  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 26930676 - 26930749
Alignment:
Q  16 caatgtctctatcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 90  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||   ||||  |||||| |||||||||||||||    
T  26930676 caatgtctctatcccaattcactaaacaacctcactcaaacatg-ttaaaacggatttaattcaaataaaaataa 26930749  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 40391937 - 40391977
Alignment:
Q  19 tgtctctatcccaattaactaaataacctcacccaaacatg 59  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  40391937 tgtctctatcccaattaactaaacaacctcacccaaacatg 40391977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 14993568 - 14993495
Alignment:
Q  16 caatgtctctatcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 90  Q
    |||||| ||||||||||||||||||| ||| |||||||||||||   ||||  |||||| |||||||||||||||    
T  14993568 caatgtgtctatcccaattaactaaacaacatcacccaaacatg-ttaaaacagatttaattcaaataaaaataa 14993495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 15113753 - 15113795
Alignment:
Q  17 aatgtctctatcccaattaactaaataacctcacccaaacatg 59  Q
    ||||| ||||||||||||||||||| |||||||||||||||||    
T  15113753 aatgtatctatcccaattaactaaacaacctcacccaaacatg 15113795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 19566449 - 19566375
Alignment:
Q  16 caatgtctctatcccaattaactaaata-acctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 90  Q
    |||||||||||| ||||||||||||| | ||| ||||||||||||||||||| | ||||| ||| |||||||||||    
T  19566449 caatgtctctataccaattaactaaaaataccccacccaaacatgccaaaaactaatttaattc-aataaaaataa 19566375  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 16094076 - 16094119
Alignment:
Q  16 caatgtctctatcccaattaactaaataacctcacccaaacatg 59  Q
    |||||||||||||||||||||||||| |||||||| ||||||||    
T  16094076 caatgtctctatcccaattaactaaacaacctcactcaaacatg 16094119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 31509263 - 31509336
Alignment:
Q  16 caatgtctctatcccaattaactaaataacctcacccaaacatgccaaaaattgatttatttcaaataaaaataa 90  Q
    ||||||||||||| |||||||||||| ||||| |||||||||||   ||||  |||||| |||||||||||||||    
T  31509263 caatgtctctatctcaattaactaaacaaccttacccaaacatg-ttaaaacggatttaattcaaataaaaataa 31509336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 32623139 - 32623096
Alignment:
Q  16 caatgtctctatcccaattaactaaataacctcacccaaacatg 59  Q
    |||||||||||||||||||||||||| |||  ||||||||||||    
T  32623139 caatgtctctatcccaattaactaaacaactccacccaaacatg 32623096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 5007058 - 5007120
Alignment:
Q  106 actcatcattgatcacaaaattgacacatcaattgcacgaaattcatttaaaaacagaaacaa 168  Q
    |||||||||||| | || |||||||||||||||||||| || ||||| || ||||| ||||||    
T  5007058 actcatcattgaccgcataattgacacatcaattgcacaaagttcatatataaacataaacaa 5007120  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 5008086 - 5008123
Alignment:
Q  15 tcaatgtctctatcccaattaactaaataacctcaccc 52  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  5008086 tcaatgtctcttttccaattaactaaataacctcaccc 5008123  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 170986 - 170943
Alignment:
Q  16 caatgtctctatcccaattaactaaataacctcacccaaacatg 59  Q
    |||||||||||||||||||||||||| |||||  ||||||||||    
T  170986 caatgtctctatcccaattaactaaacaacctgtcccaaacatg 170943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 4620 - 4558
Alignment:
Q  106 actcatcattgatcacaaaattgacacatcaattgcacgaaattcatttaaaaacagaaacaa 168  Q
    |||||||||||| | || |||||||||||||||||||| || ||||| || ||||| ||||||    
T  4620 actcatcattgaccgcataattgacacatcaattgcacaaagttcatatataaacataaacaa 4558  T

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Target: scaffold0578; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 3592 - 3555
Alignment:
Q  15 tcaatgtctctatcccaattaactaaataacctcaccc 52  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  3592 tcaatgtctcttttccaattaactaaataacctcaccc 3555  T

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Target: scaffold0043 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 66478 - 66446
Alignment:
Q  15 tcaatgtctctatcccaattaactaaataacct 47  Q
    ||||||||||||||||||||||||||| |||||    
T  66478 tcaatgtctctatcccaattaactaaacaacct 66446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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