View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11362_high_1 (Length: 825)

Name: NF11362_high_1
Description: NF11362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11362_high_1
NF11362_high_1
[»] chr1 (2 HSPs)
chr1 (18-474)||(26278044-26278505)
chr1 (500-812)||(26278560-26278872)
[»] chr3 (4 HSPs)
chr3 (500-553)||(25239614-25239667)
chr3 (259-379)||(25239797-25239917)
chr3 (500-553)||(27404186-27404239)
chr3 (280-364)||(33426954-33427041)
[»] chr4 (3 HSPs)
chr4 (279-362)||(8351861-8351944)
chr4 (328-421)||(51353063-51353159)
chr4 (313-373)||(41969466-41969526)
[»] chr2 (2 HSPs)
chr2 (259-357)||(534044-534142)
chr2 (312-373)||(31627207-31627268)
[»] chr8 (1 HSPs)
chr8 (279-362)||(26172234-26172317)
[»] chr7 (4 HSPs)
chr7 (500-553)||(35480106-35480159)
chr7 (321-357)||(35479898-35479934)
chr7 (259-369)||(713818-713928)
chr7 (279-364)||(16781368-16781453)
[»] chr5 (4 HSPs)
chr5 (500-553)||(18884762-18884815)
chr5 (280-361)||(1817751-1817832)
chr5 (313-352)||(23218121-23218160)
chr5 (311-356)||(1817950-1817995)


Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 474
Target Start/End: Original strand, 26278044 - 26278505
Alignment:
Q  18 actaattacaccgatttaaaaaataatttaatcaacttaaaaagtagttgaacggaaattaactaccattttaaagcaaacgatagttaattacctatgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  26278044 actaattacaccgatttaaaaaataatttaatcaacttaaaaagtagttgaacggaaattaactaccattttaaagcaaacgagagctaattacctatgt 26278143  T
Q  118 gggtttaggttaaaaagaaacgttgcttgaataatagcgcccgcatgtagagagtgattgcgattcgacgatactaagttgacacctacgtgggtttagg 217  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  26278144 gggtttaggttaaaaagaaatgttgcttgaataatagcgcccgcatggagagagtgattgcgattcgacgatgctaagttgacacctatgtgggtttagg 26278243  T
Q  218 ttgtcagaaatatctacgcaacaaaaaac----------aatnnnnnnnnntcaatgaacaacttatggaggcatttcatc-aaacatttagaatgcaaa 306  Q
    ||||||||||||||||| |||||||||||          |||         |||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  26278244 ttgtcagaaatatctacacaacaaaaaacaataaaaaaaaataaaaaaaattcaatgaacatcttatggaggcatttcatcaaaacatttagaatgcaaa 26278343  T
Q  307 atatacattatgagttcattttgttatttcaatttctaaactaccacattgcacttaatcttactcttattaacggtcagagttcaaacatgtaagcatt 406  Q
    ||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  26278344 atatacat--tgagtttattttgttatttcaatttctaaactaccacattgcacttaatcttactcttattaacagtcacagttcaaacatgtaagcatt 26278441  T
Q  407 tgatcattaactaccnnnnnnnctgacaatttcataaaccctaaaaactaacacatgacaactttaaa 474  Q
    |||||||||||| ||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  26278442 tgatcattaactgcc----aaactgacaatttcataaaccctaaaaactaacacatgacaactttaaa 26278505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 500 - 812
Target Start/End: Original strand, 26278560 - 26278872
Alignment:
Q  500 ttacttgtagttgaggttaaagttgaacttgatttgcttgaagttgaagaaatttgattagcttgagtatggagggagaattttgattgaagttgtgttt 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26278560 ttacttgtagttgaggttaaagttgaacttgatttgcttgaagttgaagaaatttgattagcttgagtatggagggagaattttgattgaagtagtgttt 26278659  T
Q  600 tgaaagaatcagtaaacgattgttgctattctggaataaaccagaacgctgcggcaattaaccgtcgtttggggtgagcaatagttaactgccgttgagt 699  Q
    ||||||||||||| ||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26278660 tgaaagaatcagttaacggctgttgctattctggaataaaccaaaacgctgcggcaattaaccgtcgtttggggtgagcaatagttaactgccgttgagt 26278759  T
Q  700 tcaattaggtaattttggggtgttaatgcaattctaaagttagaagaacaattttcctgatacaaaggggcagatatacagttggctttgaagcccataa 799  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26278760 tcaattaggtaattttggggtgttaatgcaattctaaagttagaagaacaattttcctgatacaaaggggcagatatacagttggctttgaagcccatag 26278859  T
Q  800 cccgacctttgct 812  Q
    |||||||||||||    
T  26278860 cccgacctttgct 26278872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 500 - 553
Target Start/End: Complemental strand, 25239667 - 25239614
Alignment:
Q  500 ttacttgtagttgaggttaaagttgaacttgatttgcttgaagttgaagaaatt 553  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25239667 ttacttgtagttgaggttgaagttgaacttgatttgcttgaagttgaagaaatt 25239614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 259 - 379
Target Start/End: Complemental strand, 25239917 - 25239797
Alignment:
Q  259 tcaatgaacaacttatggaggcatttcatcaaacatttagaatgcaaaatatacattatgagttcattttgttatttcaatttctaaactaccacattgc 358  Q
    ||||| ||||| | || ||| ||||| |||||||| || || | ||| | ||| |||||||||||||| |||||||||||| ||||||||||||||||||    
T  25239917 tcaatcaacaattcattgagacattttatcaaacacttggagttcaacaaatatattatgagttcattgtgttatttcaatctctaaactaccacattgc 25239818  T
Q  359 acttaatcttactcttattaa 379  Q
    ||| || |||||||| |||||    
T  25239817 actcaaacttactctaattaa 25239797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 553
Target Start/End: Complemental strand, 27404239 - 27404186
Alignment:
Q  500 ttacttgtagttgaggttaaagttgaacttgatttgcttgaagttgaagaaatt 553  Q
    |||||||||||||||||  ||||| || |||||||| |||||||||| ||||||    
T  27404239 ttacttgtagttgaggtagaagttcaagttgatttgtttgaagttgaggaaatt 27404186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 280 - 364
Target Start/End: Original strand, 33426954 - 33427041
Alignment:
Q  280 catttcatcaaacatttagaatgcaaaatatacattatgagttcattttgttatttca---atttctaaactaccacattgcacttaa 364  Q
    |||||||||||||| ||||||  ||||||||||||  |  | ||||| ||||||||||   |||| ||||||||||||||||| ||||    
T  33426954 catttcatcaaacacttagaacacaaaatatacatactttgatcattgtgttatttcaattatttttaaactaccacattgcatttaa 33427041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 279 - 362
Target Start/End: Original strand, 8351861 - 8351944
Alignment:
Q  279 gcatttcatcaaacatttagaatgcaaaatatacattatgagttcattttgttatttcaatttctaaactaccacattgcactt 362  Q
    |||||||||||||||  |  | ||| |||||||||||||||||||||| ||||||||||| || ||||||||||||||| ||||    
T  8351861 gcatttcatcaaacacatgtagtgctaaatatacattatgagttcattgtgttatttcaagttttaaactaccacattgaactt 8351944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 328 - 421
Target Start/End: Complemental strand, 51353159 - 51353063
Alignment:
Q  328 tgttatttcaatttctaaactaccacattgcacttaatcttactc---ttattaacggtcagagttcaaacatgtaagcatttgatcattaactacc 421  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||   | || | |  |||  ||||||||| | ||||||||||||||||||||||    
T  51353159 tgttatttcaatttataaactatcacattgcacttgatcttactctaatcatcatcattcattgttcaaacaagcaagcatttgatcattaactacc 51353063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 313 - 373
Target Start/End: Original strand, 41969466 - 41969526
Alignment:
Q  313 attatgagttcattttgttatttcaatttctaaactaccacattgcacttaatcttactct 373  Q
    |||||||||| ||| ||| |||||||| |||||||||||| ||||||| ||| ||||||||    
T  41969466 attatgagtttattgtgtcatttcaatctctaaactaccatattgcacataaacttactct 41969526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 259 - 357
Target Start/End: Complemental strand, 534142 - 534044
Alignment:
Q  259 tcaatgaacaacttatggaggcatttcatcaaacatttagaatgcaaaatatacattatgagttcattttgttatttcaatttctaaactaccacattg 357  Q
    ||||||||||||||||  || |||||||||||||| || || ||||||||||||||| | | || ||| | |||||||||||| ||||| |||||||||    
T  534142 tcaatgaacaacttattcagacatttcatcaaacacttggagtgcaaaatatacattcttaattgattgtattatttcaatttttaaaccaccacattg 534044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 373
Target Start/End: Complemental strand, 31627268 - 31627207
Alignment:
Q  312 cattatgagttcattttgttatttcaatttctaaactaccacattgcacttaatcttactct 373  Q
    ||||||||||| ||| ||| |||||||| |||||||||||||||| |||| || ||||||||    
T  31627268 cattatgagtttattgtgtcatttcaatctctaaactaccacattacactcaaacttactct 31627207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 279 - 362
Target Start/End: Original strand, 26172234 - 26172317
Alignment:
Q  279 gcatttcatcaaacatttagaatgcaaaatatacattatgagttcattttgttatttcaatttctaaactaccacattgcactt 362  Q
    ||||||||||||||| || || ||| ||||||||||| | |||||||| | ||||||||| || ||||||||||||||| ||||    
T  26172234 gcatttcatcaaacacttggagtgctaaatatacattcttagttcattgtattatttcaagttttaaactaccacattgaactt 26172317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 500 - 553
Target Start/End: Original strand, 35480106 - 35480159
Alignment:
Q  500 ttacttgtagttgaggttaaagttgaacttgatttgcttgaagttgaagaaatt 553  Q
    |||||||||||||||||| || |||||| ||||||| |||||||||||||||||    
T  35480106 ttacttgtagttgaggttgaaattgaacatgatttgtttgaagttgaagaaatt 35480159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 35479898 - 35479934
Alignment:
Q  321 ttcattttgttatttcaatttctaaactaccacattg 357  Q
    |||||| ||||||||||||||||||||||||||||||    
T  35479898 ttcattatgttatttcaatttctaaactaccacattg 35479934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 259 - 369
Target Start/End: Complemental strand, 713928 - 713818
Alignment:
Q  259 tcaatgaacaacttatggaggcatttcatcaaacatttagaatgcaaaatatacattatgagttcattttgttatttcaatttctaaactaccacattgc 358  Q
    ||||||||||||| || ||||| ||||||||||||||| ||  | |||||||||||  | |||| ||| | |||||||||||  ||||    ||||||||    
T  713928 tcaatgaacaactcattgaggcgtttcatcaaacatttggagagtaaaatatacatacttagtttattgttttatttcaattcttaaaaactcacattgc 713829  T
Q  359 acttaatctta 369  Q
    |||||| ||||    
T  713828 acttaaactta 713818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 279 - 364
Target Start/End: Complemental strand, 16781453 - 16781368
Alignment:
Q  279 gcatttcatcaaacatttagaatgcaaaatatacattatgagttcattttgttatttcaatttctaaactaccacattgcacttaa 364  Q
    ||||||||||||||| || || ||||||||||| | | |   |||||| ||||||||||| || ||||||| ||||||| ||||||    
T  16781453 gcatttcatcaaacactttgagtgcaaaatatataatctctattcattgtgttatttcaacttttaaactatcacattgaacttaa 16781368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 500 - 553
Target Start/End: Original strand, 18884762 - 18884815
Alignment:
Q  500 ttacttgtagttgaggttaaagttgaacttgatttgcttgaagttgaagaaatt 553  Q
    |||||||| ||||| ||| ||||||||||||||| |||||||||||||||||||    
T  18884762 ttacttgtggttgaagttgaagttgaacttgattggcttgaagttgaagaaatt 18884815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 1817751 - 1817832
Alignment:
Q  280 catttcatcaaacatttagaatgcaaaatatacattatgagttcattttgttatttcaatttctaaactaccacattgcact 361  Q
    ||||| ||||||||| |||| | ||| ||| ||||||||||| |||| ||| |||| ||| ||||||||| |||||||||||    
T  1817751 cattttatcaaacatctagagttcaacataaacattatgagtacattgtgtcatttgaatctctaaactatcacattgcact 1817832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 352
Target Start/End: Original strand, 23218121 - 23218160
Alignment:
Q  313 attatgagttcattttgttatttcaatttctaaactacca 352  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  23218121 attatgagttcattgtgttatttcaatctctaaactacca 23218160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 311 - 356
Target Start/End: Original strand, 1817950 - 1817995
Alignment:
Q  311 acattatgagttcattttgttatttcaatttctaaactaccacatt 356  Q
    |||||||||||||||| ||  |||||||| ||||||||||||||||    
T  1817950 acattatgagttcattgtgccatttcaatctctaaactaccacatt 1817995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University