View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11362_high_10 (Length: 285)
Name: NF11362_high_10
Description: NF11362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11362_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 8137299 - 8137096
Alignment:
| Q |
1 |
tccagtgacagcagccaaaagggtagctatagaaaaaagatagagaagggaaggagctatagctcccatggctgaaaattgtgatgtctaaagatgaagt |
100 |
Q |
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| T |
8137299 |
tccagtgacaacagccaaaagggtagctagagaaaaaagatagagaagggaaggacctatagctcccatggctgcaaattgtgatgtctaaagatgaagt |
8137200 |
T |
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| Q |
101 |
agtgacatctatataaatgcaagaaaatgggccatgattttttaatgagttagttatgtcgtttaatcatcacaatacatattcaccctatgtatctggt |
200 |
Q |
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| T |
8137199 |
agtgacatctatataaatgcaagaaaatgggccatgattttttaatgggttagttatgtcgtttaatcatcacaatacatattgaccctatgtatttggt |
8137100 |
T |
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| Q |
201 |
tgtc |
204 |
Q |
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|||| |
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| T |
8137099 |
tgtc |
8137096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 8161956 - 8161883
Alignment:
| Q |
1 |
tccagtgacagcagccaaaagggtagctatagaaaaaagatagagaagggaaggagctatagctcccatggctg |
74 |
Q |
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|||||||||| |||||||||| ||||| | ||||||||||||||| ||| || || ||||||| |||||||| |
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| T |
8161956 |
tccagtgacaacagccaaaagtgtagccagagaaaaaagatagaggaggaaatgacttatagctttcatggctg |
8161883 |
T |
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