View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11362_high_19 (Length: 240)
Name: NF11362_high_19
Description: NF11362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11362_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 25738949 - 25738726
Alignment:
| Q |
1 |
ctctcatgggacttaagtaggacnnnnnnnngtttcttattaaatattc-aaactatatattgccattttcatttggttgtaatttacttaaataaacta |
99 |
Q |
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| T |
25738949 |
ctctcatgggacttaagtaggacttttttttgtttcttattaaatattccaaactatatattgccattttcatttggttgtaatttacttgaataaacta |
25738850 |
T |
|
| Q |
100 |
atttggtaactgcccctaaannnnnnnaacatcatttattattgctggcctaaggagcatgaagcatgcagaattaataagtgttaatgttagtcaataa |
199 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25738849 |
atttggtaactgcccctaaatttttttaacataatttattattgctggcctaaggagcatgaagcatgcagaattaataagtgttaatgttagtcaataa |
25738750 |
T |
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| Q |
200 |
cctgccaaattagagatggagacc |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
25738749 |
cctgccaaattagagatggagacc |
25738726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 25725187 - 25725091
Alignment:
| Q |
127 |
aacatcatttattattgctggcctaaggagcatgaagcatgcagaattaataagtgttaatgttagtcaataacctgccaaattagagatggagacc |
223 |
Q |
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||||| |||||||||||||||||| ||| ||||| |||||||||||||||| |||||| |||| |||||||||| ||||| |||||||| ||||||| |
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| T |
25725187 |
aacataatttattattgctggccttaggggcatggagcatgcagaattaattagtgtttatgtaagtcaataacttgccagattagagacggagacc |
25725091 |
T |
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