View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11362_high_22 (Length: 233)
Name: NF11362_high_22
Description: NF11362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11362_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 41085009 - 41084808
Alignment:
| Q |
19 |
aatattacaaactgacttgacttacatgaagtcagagttcagaaaccgtagtgagtgttacacctaacaaacagacttaacaaacgataaaataattgat |
118 |
Q |
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| T |
41085009 |
aatattacgaactgacttgacttacatgaagtcagagttcagaaaccctagtgagtgttacacctaacaaacagacttaacaaacgataaaataattgat |
41084910 |
T |
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| Q |
119 |
catatcattactattgagcaataataagatattataaaaactagactatagtataccacaaaaataagagattattacaactacaaa-ttatcatagata |
217 |
Q |
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| T |
41084909 |
catatcattactattgagcaataatgagatattataaaaactagactatagtatactacaaaaataagagattattacaactacaaacttatcatagata |
41084810 |
T |
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| Q |
218 |
tt |
219 |
Q |
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|| |
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| T |
41084809 |
tt |
41084808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 3817236 - 3817177
Alignment:
| Q |
98 |
acaaacgataaaataattgatcatatcattactattgagcaataataagatattataaaaa |
158 |
Q |
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|||||| |||||| ||| ||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
3817236 |
acaaacaataaaacaat-gatcatatcattactattgagcaataaagagatgttataaaaa |
3817177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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