View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11362_high_5 (Length: 457)
Name: NF11362_high_5
Description: NF11362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11362_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 3629803 - 3629367
Alignment:
| Q |
1 |
gttttgtgggggtgataactgggttgatgatatcagagaaaaatgagggtttcacttgagctggggagggcaaattcaaagccatgataaacgaatattt |
100 |
Q |
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| T |
3629803 |
gttttgtgggggtgataactgggttgatgatatcagagaaaaatgagggtttcacttgagctggggagggcaaattcaaagccatgatcaacgaatattt |
3629704 |
T |
|
| Q |
101 |
agccaaatnnnnnnnnn--ttgatcaacgaattaaatagttgaatcagccactcaatttacactgacaagaaaatgaaccaatgagagtatttataagca |
198 |
Q |
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| T |
3629703 |
agccaaataaaaaaaaaaattgatcaacgaattaaatagttgaatcagccactcaatttacactgacaagaaaatgaaccaatgagagtatttataagca |
3629604 |
T |
|
| Q |
199 |
atccaattatgtacctagtcagaaatattaaaaggtgacaaattaagtgaaaaaataattgccacaatttatatgtgtggtctttgaaatgataaggata |
298 |
Q |
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| T |
3629603 |
atccaattatgtacctagtcagaaatattaaaaggtgacaaattaagtgaaaaaataattgccacaatttatatgtgtggtctttgaaatgataaggata |
3629504 |
T |
|
| Q |
299 |
atattattgcagacctttgggaatttttgttgttaattaaggttcttatttattggtagnnnnnnnnnnnnngaaagtatttattggtacacttgtttag |
398 |
Q |
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| T |
3629503 |
atattattgcagacctttgggaattttt-ttgttaattaaggttcttatttattggtagtttttttatttttgaaagtatttattggtacacttgtttag |
3629405 |
T |
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| Q |
399 |
ttcctatgaacccaacaaaaatggataatggaaccaag |
436 |
Q |
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| T |
3629404 |
ttcctatgaacccaacaaaaatggataatggaaccaag |
3629367 |
T |
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