View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11362_high_7 (Length: 393)
Name: NF11362_high_7
Description: NF11362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11362_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 5 - 375
Target Start/End: Complemental strand, 22739314 - 22738944
Alignment:
| Q |
5 |
aaagttaccacagcaagaaacgtcggagcattgaagaagagaaatctaacaattgctgtacaaccaagaaatttctttagccatatctcctctaacttcc |
104 |
Q |
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||||| |||||||||| |||||| || ||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||| |
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| T |
22739314 |
aaagtaaccacagcaacaaacgttggggcattaaagaagagaaatctaataattgctgcaccaccaagaaatttctttagccatgtctcctctaacttcc |
22739215 |
T |
|
| Q |
105 |
taagatgaatgatctttgataagaaattcaactcccatgcatgaagtttaagaatcctcatgttcattagaatctcagacgtcgccttcattcttttatc |
204 |
Q |
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|| ||||| ||||| |||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22739214 |
tagtctgaataatcttcgataagaatttcatctcccatgcttgaagtttaagaatcctcatgttcattagaatctcagacgtcgccttcattcttttatc |
22739115 |
T |
|
| Q |
205 |
tttaaattccattaacttaccttgaaacttctcttgcagtgatgccatgggatggtttagcaacatcacaactacggtggcggcaaaagcagctaccgaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||| |||| |
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| T |
22739114 |
tttaaattccattaacttaccttgaaacttctcttgcagtgatgccataggatggtttagcaacatcacaactacagtggcggcaaaagctgctagcgaa |
22739015 |
T |
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| Q |
305 |
gaagcccctacacttatatgaagtataaacaaagccaaagaaacttgcagaacagccctccatggttcatg |
375 |
Q |
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| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22739014 |
gcattccctacacttctatgaagtataaacaaagccaaagaaacttgcagaacagccctccatgtttcatg |
22738944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 375
Target Start/End: Original strand, 22727669 - 22728039
Alignment:
| Q |
5 |
aaagttaccacagcaagaaacgtcggagcattgaagaagagaaatctaacaattgctgtacaaccaagaaatttctttagccatatctcctctaacttcc |
104 |
Q |
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||||| |||||||||| |||| | || ||||| ||||| |||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
22727669 |
aaagtaaccacagcaacaaacattggggcattaaagaacagaaatctaataattgctgtactaccaagaaatttctttagccatgtctcctctaacttcc |
22727768 |
T |
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| Q |
105 |
taagatgaatgatctttgataagaaattcaactcccatgcatgaagtttaagaatcctcatgttcattagaatctcagacgtcgccttcattcttttatc |
204 |
Q |
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||| |||||| || || |||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22727769 |
taatatgaataattttcgataagaatttcatctcccatgcttgaagtttaagaatcctcatgttcattagaatctcagacgtcgccttcattcttttatc |
22727868 |
T |
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| Q |
205 |
tttaaattccattaacttaccttgaaacttctcttgcagtgatgccatgggatggtttagcaacatcacaactacggtggcggcaaaagcagctaccgaa |
304 |
Q |
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||| || |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22727869 |
tttgaactccattaacttaacttgaaacttctcttgcagtgatgccaaaggatggtttagcaacatcacaactacggtggcggcaaaagcagctactgaa |
22727968 |
T |
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| Q |
305 |
gaagcccctacacttatatgaagtataaacaaagccaaagaaacttgcagaacagccctccatggttcatg |
375 |
Q |
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| | ||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||||| |
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| T |
22727969 |
gcaacccctacacttctatgaagtataaacaaagccaaagagacttgcagagcagccttccatggatcatg |
22728039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 22751120 - 22751221
Alignment:
| Q |
137 |
tcccatgcatgaagtttaagaatcctcatgttcattagaatctcagacgtcgccttcattcttttatctttaaattccattaacttaccttgaaacttct |
236 |
Q |
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|||||| | |||||||| ||||||||||||||| ||| ||||||||| || |||||||||||||||||| | || |||| ||||| ||||||||||| |
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| T |
22751120 |
tcccatccttgaagtttgagaatcctcatgttccttaaaatctcagatgtggccttcattcttttatctcttgatgccatcaacttgttttgaaacttct |
22751219 |
T |
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| Q |
237 |
ct |
238 |
Q |
| |
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|| |
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| T |
22751220 |
ct |
22751221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 41452424 - 41452522
Alignment:
| Q |
149 |
agtttaagaatcctcatgttcattagaatctcagacgtcgccttcattcttttatctttaaattccattaacttaccttgaaacttctcttgcagtgat |
247 |
Q |
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|||||||| |||||||||||| ||| ||| ||||| || | |||||||||| |||| || | ||||| |||||| ||||||||||||||||| |||| |
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| T |
41452424 |
agtttaaggatcctcatgttccttaaaatttcagatgtggtcttcattcttgtatcctttgactccatcaacttattttgaaacttctcttgcaatgat |
41452522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 14241409 - 14241507
Alignment:
| Q |
149 |
agtttaagaatcctcatgttcattagaatctcagacgtcgccttcattcttttatctttaaattccattaacttaccttgaaacttctcttgcagtgat |
247 |
Q |
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|||||||| |||||||||||| ||| ||| |||||||| | |||||||| ||| || | ||||| |||||| |||||||||||||||||| |||| |
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| T |
14241409 |
agtttaaggatcctcatgttccttaaaatttcagacgtggttttcattctagcatcctttgactccatcaacttatcttgaaacttctcttgcaatgat |
14241507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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