View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11362_low_17 (Length: 248)
Name: NF11362_low_17
Description: NF11362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11362_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 8137395 - 8137588
Alignment:
| Q |
1 |
ccaggttcataccatcacatagtatattttattttgttacatggaccaccacatagatagcattagcaacaatgtattcaattactcatttccttgttaa |
100 |
Q |
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| T |
8137395 |
ccaggttcataccatcacatagtatattt-attttgttacatggaccaccacatagatagcattagcaacaatgtattcaattactcatttccttgttaa |
8137493 |
T |
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| Q |
101 |
taaatattccaacataagggccagtttatttgcagtg-tttgctattattatttgaacttagattctgttcatggtgattttctgtttatttaaa |
194 |
Q |
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| T |
8137494 |
tacatattccaacataagggccagtttatttgcagtgttttgctattattatttgaacttagattctgttcatggtgattttctgtttatttaaa |
8137588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 8137641 - 8137684
Alignment:
| Q |
191 |
taaagtggtaagccattgaaattaaactcacacaactctgaggt |
234 |
Q |
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| T |
8137641 |
taaagtggtaagccattgaaattaaactcacacaactgtgaggt |
8137684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 237
Target Start/End: Original strand, 33564924 - 33564963
Alignment:
| Q |
198 |
gtaagccattgaaattaaactcacacaactctgaggtctc |
237 |
Q |
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| T |
33564924 |
gtaagccattgaaattaaactcacacaactataaggtctc |
33564963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Original strand, 34121579 - 34121609
Alignment:
| Q |
204 |
cattgaaattaaactcacacaactctgaggt |
234 |
Q |
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| T |
34121579 |
cattgaaattaaactcacacaactctgaggt |
34121609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 23036215 - 23036256
Alignment:
| Q |
193 |
aagtggtaagccattgaaattaaactcacacaactctgaggt |
234 |
Q |
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| T |
23036215 |
aagtggtaatccattgaaattaaactcacataactgtgaggt |
23036256 |
T |
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