View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11362_low_18 (Length: 240)
Name: NF11362_low_18
Description: NF11362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11362_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 43110274 - 43110061
Alignment:
| Q |
11 |
gagaagaaaaagtatgctgttaggattcctcctttgtaaaactaaaaagtctttctttacaaatattcttatcatttaagcaaaactgcactacagttcc |
110 |
Q |
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| T |
43110274 |
gagaagaaaaagtatgctgttaggattcctcctttgtaaaactaaaaagtctttctttacaaatattcttatcatttaagcaaaactgcactacagttcc |
43110175 |
T |
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| Q |
111 |
tttaacttaatctaaagtttcaaatggtcttttgtttcatgtaaagttggtcctctattatgtttaaaaacatcaacattgttggaccaaacatcacttt |
210 |
Q |
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| T |
43110174 |
tttaacttaatctaaagtttcaaatggtcttttgtttcatgtaaagttggtcctctattatgtttaaaaacatcaacattgttggaccaaacatcacttt |
43110075 |
T |
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| Q |
211 |
cgtctatgcatgtt |
224 |
Q |
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|||||||||||||| |
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| T |
43110074 |
cgtctatgcatgtt |
43110061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 33395708 - 33395651
Alignment:
| Q |
168 |
ttatgtttaaaaacatcaacattgttggaccaaacatca-ctttcgtctatgcatgtt |
224 |
Q |
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|||||||||||||| |||||| ||||||||||||| ||| ||||||||||| ||||| |
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| T |
33395708 |
ttatgtttaaaaacttcaacaatgttggaccaaacttcatttttcgtctatgtatgtt |
33395651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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