View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11362_low_21 (Length: 239)
Name: NF11362_low_21
Description: NF11362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11362_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 54084192 - 54084402
Alignment:
| Q |
15 |
tcaaacttaaaataatcattccgcattttcacaccaacaccatacatactctacaacttaatttcacgccatgccatcaaccatagaattcagcatctat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54084192 |
tcaaacttaaaataatcattccgcattttcacaccaacactatacatactctacaacttaatttcacgccatgccatcaaccatagaattcagcatctat |
54084291 |
T |
|
| Q |
115 |
aaatactccaaaaacctttaagacctcttcacggtagccaacaaatcaaatacactacataccctctaaagtttgttcaattcgatactatacttgtact |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54084292 |
aaatactccaaaaacctttaagacctcttcacagtagccaacaaatcaaatacactacataccctctaaagtttgttcaattcgatactatacttgtact |
54084391 |
T |
|
| Q |
215 |
atatagttggc |
225 |
Q |
| |
|
||||||||||| |
|
|
| T |
54084392 |
atatagttggc |
54084402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 54080931 - 54080967
Alignment:
| Q |
161 |
caaatacactacataccctctaaagtttgttcaattc |
197 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54080931 |
caaatacactgcataccctctaaagtttgttcaattc |
54080967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 54080837 - 54080873
Alignment:
| Q |
15 |
tcaaacttaaaataatcattccgcattttcacaccaa |
51 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
54080837 |
tcaaacttaaaataatcattccacatgttcacaccaa |
54080873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University