View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11362_low_3 (Length: 512)
Name: NF11362_low_3
Description: NF11362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11362_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 9 - 497
Target Start/End: Complemental strand, 43142481 - 43142003
Alignment:
| Q |
9 |
tgtaatacctgcccacaaaggaacagacacttaatttggtaattgaattagcacactcttcaaattagtctttaaattaaaacctataaaagtttcgtaa |
108 |
Q |
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| T |
43142481 |
tgtaatacctgcccacaaaggaacagacacttaatttggtaattgaattagcacactcttcaaatcagtctttaaattaaaacctataaaagtttcgtaa |
43142382 |
T |
|
| Q |
109 |
gttattctctcatccaaatatttaattggca-atttgtatattcgttaatggttcttacattatcaatatacatcaatattgtccttaaaggtccgtctg |
207 |
Q |
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| T |
43142381 |
gttattctctcatccaaatatttaattggcacatttgtatattcgttaatggttcttacattatcaatat----------tgtccttaaaggtccgtctg |
43142292 |
T |
|
| Q |
208 |
aacaattttttattttcaaacaggtctaaaaacaaattcaaaatatgggtctttttatccacatatgagaccttttttgtttatcaaatgtaaggaaaaa |
307 |
Q |
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| T |
43142291 |
aacaatttttaattttcaaacaggtctaaaaacaaattcaaaatatgggtctttttatccacatatgagaccttttttgtttatcaaatgtaaggaaaaa |
43142192 |
T |
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| Q |
308 |
atataaattttgtcagtggatctatagttagataattttttccttgggccctcccgagtccccaaaatataataataaaaaataacaatttagtccaaca |
407 |
Q |
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| T |
43142191 |
ataaattttttgtcagtggatctatagttaaataattttttccttgggccatcccgagtccccaaaatataataa-aaaaaataacaatttagtccaaca |
43142093 |
T |
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| Q |
408 |
atgttcaaaaacttatattaaatactttcaatctctaatctcacaccttcatttttaaattgcagaccaaatcaagtttttgaagtttct |
497 |
Q |
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| T |
43142092 |
atgttcaaaaacttatattaaatactttcaatctctaatctcacatcttcatttttaaattgcagaccaaatcaagtttttgaagtttct |
43142003 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 491
Target Start/End: Complemental strand, 24627564 - 24627529
Alignment:
| Q |
456 |
tcatttttaaattgcagaccaaatcaagtttttgaa |
491 |
Q |
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| T |
24627564 |
tcatttttaaattgcagaacaaatcaagtttttgaa |
24627529 |
T |
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