View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11362_low_4 (Length: 509)
Name: NF11362_low_4
Description: NF11362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11362_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Complemental strand, 47386545 - 47386046
Alignment:
| Q |
18 |
accttgtacctttatctatatttttgtaagattcttaggtaaggcattcaaaacgtgcggtttgcattctactcaaactcgc----ttagtgtttcacta |
113 |
Q |
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| T |
47386545 |
accttgtacctttatctatatttttgtaagattcttaggtaaggcattcaaaacgtgcggtttgcattctactcaaactcaccgagtgagtgtttcacta |
47386446 |
T |
|
| Q |
114 |
ttctgctgctacatctgtatcgtatcactgcgctgctcgtgtgtccttcttggaacaaa-----gtaacgataataactaccgacaagactatagtttat |
208 |
Q |
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| T |
47386445 |
ttctgctgctacatctgtatcgtatcactgcgctgctcgtgtgtccttcttggaacaaattaaagtaacgataataactaccgacaagactatagtttat |
47386346 |
T |
|
| Q |
209 |
gagacaaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaa---------tatttaaatcttgtatttt--attaatacatatataa |
297 |
Q |
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| T |
47386345 |
gatacaaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaaggacaaaaatatttaaatcttgtattttttattaatacatatataa |
47386246 |
T |
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| Q |
298 |
atagaactgaaaatataaatagttttaggaagtagtagccactgccacccaaagggcttcaccccaatttaaaaattctttgttttcattttcaccacct |
397 |
Q |
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| T |
47386245 |
atagaactgaaaatataaatagttttaggaagtagtagccactgccacccaaagggattcaccccaatttaaaaattctttgttttcattttcaccacct |
47386146 |
T |
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| Q |
398 |
tctttgcaccttcttgcccactcatacttttccattcttgcgtcactacttttcatcttctcacatgcaacaacttcttctagttccaccttctctgctt |
497 |
Q |
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| T |
47386145 |
tctttgcaccttcttgcccactcatacttttccattcttgcgtcactacttttcatcttctcacatgcaacaacttcctctagttccaccttctctgctt |
47386046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 213 - 404
Target Start/End: Original strand, 47372630 - 47372820
Alignment:
| Q |
213 |
caaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaatattta-aatcttgtattttattaatacatatataaatagaactgaaaat |
311 |
Q |
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|||||||||||||||||||||||||| || | ||||||||| | ||| | || | |||||||| ||||||||||||| ||| |||||| |||||| |
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| T |
47372630 |
caaacacgggaaattcattaaacaaagcaggttgaatgcacaaaaaaacaaatacataatcttgttttttattaatacagata--aatagatgggaaaat |
47372727 |
T |
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| Q |
312 |
ataaatagttttaggaagtagtagccactgccacccaaag-----ggcttcaccccaatttaaaaattctttgttttcattttcaccaccttctttgc |
404 |
Q |
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| T |
47372728 |
ataaatagttttaggaagtagtagccac-----ccaaaagttcacgttctcaccccaatttaacgattcattgttttcattttcaccaccttctttgc |
47372820 |
T |
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