View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11363_high_12 (Length: 310)
Name: NF11363_high_12
Description: NF11363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11363_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 37704716 - 37704454
Alignment:
| Q |
20 |
ctgtgattgctacttaaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagat |
119 |
Q |
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| T |
37704716 |
ctgtgattgctacttaaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagat |
37704617 |
T |
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| Q |
120 |
attatttagtttaatgaacaccgaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcaccccca |
219 |
Q |
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| T |
37704616 |
attatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcaccccca |
37704517 |
T |
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| Q |
220 |
aaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
282 |
Q |
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| T |
37704516 |
aaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
37704454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 23 - 281
Target Start/End: Complemental strand, 37699238 - 37698974
Alignment:
| Q |
23 |
tgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaaga |
118 |
Q |
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| T |
37699238 |
tgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattccaactttagtgctaattacgttcgaaaagtcttggttttccaaga |
37699139 |
T |
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| Q |
119 |
tattatttagtttaatgaacaccgaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcaccccc |
218 |
Q |
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| T |
37699138 |
tgttatttagtttaatgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatgtcatatcagtatacggttatgaaaagcaccccc |
37699039 |
T |
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| Q |
219 |
aaaacaaaataagggaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg |
281 |
Q |
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| T |
37699038 |
aacacaaaataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg |
37698974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 23 - 282
Target Start/End: Complemental strand, 37437778 - 37437520
Alignment:
| Q |
23 |
tgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaaga |
118 |
Q |
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| T |
37437778 |
tgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattccaactt----gctaattacgttcgaaaagtcttggtcttccaata |
37437683 |
T |
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| Q |
119 |
tattatttagtttaatgaacaccgaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcaccccc |
218 |
Q |
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| T |
37437682 |
tgttatttagtttaatgaacaccaaacttttctatgattgttattgaattaatattgttgccaattgtcatatcactatacggttatgaaaagca-cccc |
37437584 |
T |
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| Q |
219 |
aaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
282 |
Q |
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| T |
37437583 |
acattaaaacaagggaatagctagactgaatttgtaaacaatctaataagtcagactttttggt |
37437520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 34 - 282
Target Start/End: Complemental strand, 37698864 - 37698636
Alignment:
| Q |
34 |
taaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgc----taattacgttcaaaaagtc-tggtcttcgaagatattatttag |
128 |
Q |
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| T |
37698864 |
taaatgaatttgttatcttatcacaacttgcaataagattccaactttagtgctaattaattacgttaaaaaagtcttggtcttccaagatgttatttag |
37698765 |
T |
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| Q |
129 |
tttaatgaacaccgaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaat |
228 |
Q |
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| T |
37698764 |
tttaacgaacaccaaacttttgtatgattg--------ttaatattgttgccaattgtcatatcactatacggt-----------------caacaaaat |
37698690 |
T |
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| Q |
229 |
aagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
282 |
Q |
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| T |
37698689 |
aagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttggt |
37698636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 16840970 - 16841109
Alignment:
| Q |
21 |
tgtgattgctacttaaatgaatttgttatcttat------cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtc-tggtcttc |
113 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||| |
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| T |
16840970 |
tgtgattggtacttaaatgaatttgttatcttattaatatcacaacttgcaataagattccaac-ttagtgctaattacgttcaaaaagtcttggtcttc |
16841068 |
T |
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| Q |
114 |
gaagatattatttagtttaatgaacaccgaacttttctatg |
154 |
Q |
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| T |
16841069 |
caagattttatttagtttattaaacaccaaacttttgtatg |
16841109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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