View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11363_high_8 (Length: 346)

Name: NF11363_high_8
Description: NF11363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11363_high_8
NF11363_high_8
[»] chr3 (4 HSPs)
chr3 (68-318)||(5351915-5352164)
chr3 (191-318)||(5344897-5345024)
chr3 (197-241)||(5325075-5325119)
chr3 (191-249)||(5338089-5338147)
[»] chr7 (8 HSPs)
chr7 (21-77)||(39577595-39577651)
chr7 (21-74)||(39592072-39592125)
chr7 (22-77)||(39541732-39541787)
chr7 (21-77)||(39334772-39334828)
chr7 (21-77)||(39346036-39346092)
chr7 (21-77)||(39567779-39567835)
chr7 (22-77)||(39550989-39551044)
chr7 (20-77)||(39360580-39360637)
[»] chr8 (1 HSPs)
chr8 (202-294)||(14535283-14535375)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 68 - 318
Target Start/End: Complemental strand, 5352164 - 5351915
Alignment:
Q  68 taacattgcaaataaaacacaggacaaggcaacaatgcaaataaaattctaaatgtaaataaagaacaaatacgttttattaattgaataaaaatcacga 167  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| |||||||||||||||||||||    
T  5352164 taacattgtaaatcaaacacaggacaaggcaacaatgcaaataaaattctaaatgcaaataaagaacaa-tacatttttttaattgaataaaaatcacga 5352066  T
Q  168 ttgaagcaatttatggaacttaaagttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttg 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5352065 ttgaagcaatttatggaacttaaagttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttg 5351966  T
Q  268 gcatcttgatcaatcaaatcgccatcaccgttaaattttgctggaggctga 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5351965 gcatcttgatcaatcaaatcgccatcaccgttaaattttgctggaggctga 5351915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 191 - 318
Target Start/End: Complemental strand, 5345024 - 5344897
Alignment:
Q  191 agttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttggcatcttgatcaatcaaatcgcc 290  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||| |||| | ||  |||  ||||||| ||||||| |||||||||||| ||    
T  5345024 agttgtttcaatttttgccttgaagttgcagagtaaatgccttcaaggacaacagaattgccaacaacctattcttagcatcttcatcaatcaaatcacc 5344925  T
Q  291 atcaccgttaaattttgctggaggctga 318  Q
    |||||  |||||||||||||||||||||    
T  5344924 atcactattaaattttgctggaggctga 5344897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 5325075 - 5325119
Alignment:
Q  197 ttcaatttttgccttgaagttgaagggtaaatgccttcaaggaca 241  Q
    |||||||| |||||||||||| |||||||||| ||||||||||||    
T  5325075 ttcaatttctgccttgaagtttaagggtaaattccttcaaggaca 5325119  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 5338089 - 5338147
Alignment:
Q  191 agttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaact 249  Q
    ||||||||||| |||  |||||||| |||||||||||| |||| ||||||| |||||||    
T  5338089 agttgtttcaaatttaaccttgaagctgaagggtaaattcctttaaggacacaagaact 5338147  T

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Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 39577595 - 39577651
Alignment:
Q  21 gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgca 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39577595 gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgca 39577651  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 39592072 - 39592125
Alignment:
Q  21 gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacatt 74  Q
    |||||||||||||| || ||||| |||||||||||||| |||||||||||||||    
T  39592072 gttttacctgtcgttacacgttttctttgtcctccagaaatacctcttaacatt 39592125  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 39541732 - 39541787
Alignment:
Q  22 ttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgca 77  Q
    |||||||||| ||||| |||||| ||||||| ||||||||||||| ||||||||||    
T  39541732 ttttacctgttgtaacgcgtttcttttgtccaccagagatacctcgtaacattgca 39541787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 39334828 - 39334772
Alignment:
Q  21 gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgca 77  Q
    ||||||||||| ||||  |||||| ||||||| |||||||||||||||| |||||||    
T  39334828 gttttacctgttgtaaggcgtttcttttgtccgccagagatacctcttatcattgca 39334772  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 39346092 - 39346036
Alignment:
Q  21 gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgca 77  Q
    ||||||||||| ||||  |||||| ||||||| |||||||||||||||| |||||||    
T  39346092 gttttacctgttgtaaggcgtttcttttgtccgccagagatacctcttatcattgca 39346036  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 39567779 - 39567835
Alignment:
Q  21 gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgca 77  Q
    ||||||||||| ||||  |||||| ||||||| ||||||||||||| ||||||||||    
T  39567779 gttttacctgttgtaaggcgtttcttttgtccaccagagatacctcgtaacattgca 39567835  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 39550989 - 39551044
Alignment:
Q  22 ttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgca 77  Q
    ||||||| || ||||| |||||| ||||||| ||||||||||||| ||||||||||    
T  39550989 ttttaccagttgtaacgcgtttcttttgtccaccagagatacctcgtaacattgca 39551044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 39360637 - 39360580
Alignment:
Q  20 agttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgca 77  Q
    |||||||||||| ||||  |||||| ||||||| ||||||||| |||||| |||||||    
T  39360637 agttttacctgttgtaaggcgtttcttttgtccgccagagatagctcttatcattgca 39360580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 294
Target Start/End: Original strand, 14535283 - 14535375
Alignment:
Q  202 tttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttggcatcttgatcaatcaaatcgccatca 294  Q
    ||||||||||||||    || |||||||||| ||| || |||||||||   | ||| |||||||| || |||| |||||||||||||||||||    
T  14535283 tttttgccttgaagccttagagtaaatgcctgcaaagataaaagaacttgtttcaacttattcttagcctcttcatcaatcaaatcgccatca 14535375  T

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