View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11364_high_1 (Length: 552)
Name: NF11364_high_1
Description: NF11364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11364_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 20 - 542
Target Start/End: Complemental strand, 40742531 - 40742015
Alignment:
| Q |
20 |
gtcccaatccttttccaatataatcatgcctttagtttttatcttttgtccaaaaagcaccaaaaggaaaggctacttcaggtaataatcaatatttata |
119 |
Q |
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| T |
40742531 |
gtcccaatccttttccaatataatcatgcctttagtttttatcttttgtccaaaaagcaccaaaaggaaaagctacttcaggtaataatcaatatttata |
40742432 |
T |
|
| Q |
120 |
gccttataggataagaagaagtccccaaaatggtgcatgcataattttcaacatccaaaggattgtcacaagttcctacgacatattttttcccttttcc |
219 |
Q |
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| T |
40742431 |
gccttataggataagaagaagtccccaaaatggtgcatgcataattttcaacatccaaaggattgtcacaagttcctacgacatgttttttcccttttcc |
40742332 |
T |
|
| Q |
220 |
actcatgaacaatacttcaaaatgttcagcatcattgttgaattcacaattgaaagattgttcattcttcttcaatctcttggtgtcactctcaccctct |
319 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40742331 |
actcatgaacaatacttcaacatgttcagcatcattgttgaattcacaattgaaagattgttcattcttcttcaatctcttggtctcactctcaccctct |
40742232 |
T |
|
| Q |
320 |
tcaacaactaaatcttcacctacaaatacaatactactattgctatccacttccttatccttgctttcttcattggttgatgatttccttttcaaactac |
419 |
Q |
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| T |
40742231 |
tcaacagctaaatcttcacctacaaatacaatactactattgctatccacttccttatccttgctttcttcattggttgatgatttccttttcaaactac |
40742132 |
T |
|
| Q |
420 |
tttcaacagagtcaattgatacatgattnnnnnnnnnnnnnnnnnnacaatattgctttgcaatcatcactacatctaacatacaatttttatcactcaa |
519 |
Q |
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||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40742131 |
ttttaacagagtcaattgatacatgatt------ttcttcttcttcacaatattgctttgcaatcatcactacatctaacatacaatttttatcactcaa |
40742038 |
T |
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| Q |
520 |
cagaacagaatcatccacctttg |
542 |
Q |
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| T |
40742037 |
cagaacagaatcatccacctttg |
40742015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 466 - 541
Target Start/End: Original strand, 10326160 - 10326235
Alignment:
| Q |
466 |
acaatattgctttgcaatcatcactacatctaacatacaatttttatcactcaacagaacagaatcatccaccttt |
541 |
Q |
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||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| | ||||||||||||||||| |
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| T |
10326160 |
acaatattgctttgcaatcataactacatgtaacatacaatttttatcaatcaacaaatcagaatcatccaccttt |
10326235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 10325966 - 10326067
Alignment:
| Q |
60 |
atcttttgtccaaaaagcaccaaaaggaaaggctacttcaggtaataatcaatatttatagccttataggataagaagaagtccccaaaatggtgcatgc |
159 |
Q |
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|||||||| |||| ||||| ||||| |||| |||||||| |||||||| ||||||||||||||| | | | ||||||||||||||||||||||||||| |
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| T |
10325966 |
atcttttggccaataagcaacaaaaaaaaag-ctacttcaagtaataattaatatttatagccttct--gttgagaagaagtccccaaaatggtgcatgc |
10326062 |
T |
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| Q |
160 |
ataat |
164 |
Q |
| |
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||||| |
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|
| T |
10326063 |
ataat |
10326067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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