View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11364_high_3 (Length: 389)
Name: NF11364_high_3
Description: NF11364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11364_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 26845977 - 26845624
Alignment:
| Q |
18 |
taatgtaggaaaggtgcaatgtgagccgatcgattttaaatcaatggccgagatcaactaatgccgcctgtaagtgcgtgctatttctactacattggga |
117 |
Q |
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| T |
26845977 |
taatgtaggaaaggtgcaatgtgagccgatcgattttaaatcaatggccgagatcaactaatgcg---tgtaagtgcgtgctatttctactacattggga |
26845881 |
T |
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| Q |
118 |
tctgatgaattatgggcgtttggtgtgagattttgcatcatggatcagagagaacagctaagatttggtcagagatgagtatttagtgtgttatctgact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26845880 |
tctgatgaattatgggcgtttggtgtgagattttgcatcatggatcagagagaacagctaagatttggtcagagatgagtatttagtgtgttatctgact |
26845781 |
T |
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| Q |
218 |
ttcagaaaaatttggatgagtgccattacaagacctatttattttctgactctctccatgtgtgattctctttctatgagtaaagagggagtgagcaagt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26845780 |
ttcagaaaaatttggatgagtgccattacaagacctatttattttctgactctctccatgtgtgattctctttctatgagtaaagagggagtgagcaagt |
26845681 |
T |
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| Q |
318 |
tggttctgagggttattgctctgtttatttatagtgaaagctttcacactctctgtg |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26845680 |
tggttctgagggttattgctctgtttatttatagtgaaagctttcacactctctgtg |
26845624 |
T |
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