View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11364_high_4 (Length: 381)
Name: NF11364_high_4
Description: NF11364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11364_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 28226003 - 28225652
Alignment:
| Q |
13 |
cagagaccaaaagatcatccagtgtagcttgttcaagcatcccaccaatcaatttttccagttcagttctgcaacctttactcaaaccaaacctagaaac |
112 |
Q |
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| T |
28226003 |
cagagaccaaaagatcatccagtgtagcttgttcaagcatcccaccaatcaatttttccagttcagttctgcaacctttactcaaaccaaacctagaaac |
28225904 |
T |
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| Q |
113 |
aatccttaatacccaaaaaagtcctctgcaagtgaagtttttcttaccaacaaatatgactccataagcagctgtttccgcaagagcggcatattcaccg |
212 |
Q |
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| T |
28225903 |
aatccttaatacccaaaaaagtcctctgcaagtgaagtttttcttaccaacaaatatgactccataagcagctgtttccgcaagagcggcatattcaccg |
28225804 |
T |
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| Q |
213 |
ctgcttctgcaatcaacagctcttgtttgagtagctgttttcagatattgcaacagaaatcttgtaaagattaagttgttgctatcagctttgtatgact |
312 |
Q |
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| T |
28225803 |
ctgcttctgcaatcaacagctcttgtttgagtagctgttttcagatattgcaacagaaatcttgtaaagattaagttgttgctatcagctttgtatgact |
28225704 |
T |
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| Q |
313 |
gaatacactgaaatagtttctcaattatctttggaggcaaagttgccaaatc |
364 |
Q |
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| T |
28225703 |
gaatacactgaaatagtttctcaattatctttggaggcaaagtcgccaaatc |
28225652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 190
Target Start/End: Original strand, 13040643 - 13040809
Alignment:
| Q |
24 |
agatcatccagtgtagcttgttcaagcatcccaccaatcaatttttccagttcagttctgcaacctttactcaaaccaaacctagaaacaatccttaata |
123 |
Q |
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| T |
13040643 |
agatcatccaatgttgctttatcaaacattccacctatcaatttctccatttcatttctacaatctttacttattccaaactttgataaaatccttagca |
13040742 |
T |
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| Q |
124 |
cccaaaaaagtcctctgcaagtgaagtttttcttaccaacaaatatgactccataagcagctgtttc |
190 |
Q |
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| T |
13040743 |
cacaaaaaaggcctctacatgaaaaattcttgtcaccaacatttatgactccatgagcagctgtttc |
13040809 |
T |
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