View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11364_high_9 (Length: 258)
Name: NF11364_high_9
Description: NF11364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11364_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 6474541 - 6474307
Alignment:
| Q |
1 |
ataagatcatgagattaaagtagacaatctgattaagctgttttcatacactaatcttcttagaacttgcttatatta---aattagaagttgttggagc |
97 |
Q |
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| T |
6474541 |
ataagatcatgagatcaaagtagacaatctgattaagctgttttcatacactaatcttcttagaacttacttatattattaaattagaagttgttggagc |
6474442 |
T |
|
| Q |
98 |
taagtacattaaggaactttaaagtaatgctgtttaatttagagtgccttctaagatagaaatttggaaagtgaaagctcgaaaaatcattatgcattat |
197 |
Q |
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| T |
6474441 |
taagtacattaaggaactttaaagtaatgctgtttaatttagagtgccttgtaagatagaaatttggaaagtgaaagctagaaaaatcattatgcatta- |
6474343 |
T |
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| Q |
198 |
actttaccttaaagtattcgaattccctcaaagcatta |
235 |
Q |
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| T |
6474342 |
--tttaccttaaagtattcgaattccctcaaaacatta |
6474307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 8982795 - 8982853
Alignment:
| Q |
135 |
tttagagtgccttctaagatagaaatttggaaagtgaaagctcgaaaaatcattatgca |
193 |
Q |
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|||| ||||| || |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8982795 |
tttatagtgctttgtaagatagaaatttggaaagtgaaagagagaaaaatcattatgca |
8982853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 47165216 - 47165252
Alignment:
| Q |
203 |
accttaaagtattcgaattccctcaaagcattacatt |
239 |
Q |
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| T |
47165216 |
accttaaagtatttgaattccctcaaaacattacatt |
47165252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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