View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11364_low_2 (Length: 485)

Name: NF11364_low_2
Description: NF11364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11364_low_2
NF11364_low_2
[»] chr4 (1 HSPs)
chr4 (16-473)||(41132489-41132929)
[»] chr8 (2 HSPs)
chr8 (426-462)||(7798360-7798396)
chr8 (426-462)||(7817630-7817666)
[»] chr7 (1 HSPs)
chr7 (169-221)||(2875235-2875287)
[»] chr3 (1 HSPs)
chr3 (168-220)||(20834584-20834636)
[»] chr1 (1 HSPs)
chr1 (171-215)||(33780274-33780318)


Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 473
Target Start/End: Original strand, 41132489 - 41132929
Alignment:
Q  16 gaaacttggttaatctttggagtttcaatcttcattcaggttgattttcaaactcttatagcatcttcaatcacaagtttgtaaggaaattaagtttgat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||    
T  41132489 gaaacttggttaatctttggagtttcaatcttcattcaggttgattttcaaactcttatagcatcttcaatcacaagt-----------------ttgat 41132571  T
Q  116 tctataaccactattaaattctcacaccgtcaaatcatacttatactaatacaactcaaacatattttacttcaatgatagaaaaattaagcaactttta 215  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41132572 tctataaccactattaaattctcacaccgtgaaatcatacttatactaatacaactcaaacatattttacttcaatgatagaaaaattaagcaactttta 41132671  T
Q  216 tgaaatacactttaaatattatacacttagacaatccagaaaaagagtcaaatatataatttttacgtaccattgccattgtcattagcccataagacaa 315  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  41132672 tgaaatacactttaaatattagacacttagacaatccagaaaaagagtcaaatatataatttttacgtaccattgccattgtcattagcccataagacga 41132771  T
Q  316 tgaaaacatatttgagcatggggataagcacaatagtgtagattatgagagacaatactccaagaatgtcatcgttgtttttaatccctttagtgaaagt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41132772 tgaaaacatatttgagcatggggataagcacaatagtgtagattatgagagacaatactccaagaatgtcatcgttgtttttaatccctttagcgaaagt 41132871  T
Q  416 acttgcatacacataaagtggagatgtaccaatatcaccatatacaattcctatgctt 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41132872 acttgcatacacataaagtggagatgtaccaatatcaccatatacaattcctatgctt 41132929  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 462
Target Start/End: Complemental strand, 7798396 - 7798360
Alignment:
Q  426 acataaagtggagatgtaccaatatcaccatatacaa 462  Q
    ||||||||||||||||| |||||||||||||||||||    
T  7798396 acataaagtggagatgttccaatatcaccatatacaa 7798360  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 462
Target Start/End: Complemental strand, 7817666 - 7817630
Alignment:
Q  426 acataaagtggagatgtaccaatatcaccatatacaa 462  Q
    ||||||||||||||||| |||||||||||||||||||    
T  7817666 acataaagtggagatgttccaatatcaccatatacaa 7817630  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 2875235 - 2875287
Alignment:
Q  169 actcaaacatattttacttcaatgatagaaaaattaagcaacttttatgaaat 221  Q
    |||||| |||||||| ||||||||||| || ||||||||||||||||| ||||    
T  2875235 actcaagcatatttttcttcaatgataaaataattaagcaacttttataaaat 2875287  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 20834584 - 20834636
Alignment:
Q  168 aactcaaacatattttacttcaatgatagaaaaattaagcaacttttatgaaa 220  Q
    ||||||||||||||||| | |||| |||||| | |||| ||||||||||||||    
T  20834584 aactcaaacatattttattccaataatagaacatttaaacaacttttatgaaa 20834636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 33780274 - 33780318
Alignment:
Q  171 tcaaacatattttacttcaatgatagaaaaattaagcaactttta 215  Q
    |||| |||||||||||| || |||||||||||||| |||||||||    
T  33780274 tcaagcatattttactttaacgatagaaaaattaatcaactttta 33780318  T

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