View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11364_low_6 (Length: 334)

Name: NF11364_low_6
Description: NF11364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11364_low_6
NF11364_low_6
[»] chr1 (18 HSPs)
chr1 (19-320)||(10993917-10994218)
chr1 (73-320)||(11005233-11005480)
chr1 (77-320)||(10901309-10901552)
chr1 (173-310)||(11032933-11033070)
chr1 (128-320)||(10979031-10979223)
chr1 (155-320)||(11010624-11010789)
chr1 (156-307)||(11007463-11007614)
chr1 (119-320)||(10932667-10932869)
chr1 (127-320)||(10914295-10914488)
chr1 (155-320)||(10903163-10903328)
chr1 (155-320)||(11028820-11028985)
chr1 (208-277)||(9348803-9348872)
chr1 (208-271)||(9234322-9234385)
chr1 (208-249)||(9255310-9255351)
chr1 (208-249)||(9318572-9318613)
chr1 (208-249)||(9319689-9319730)
chr1 (208-249)||(9350006-9350047)
chr1 (208-277)||(9384009-9384078)
[»] chr6 (1 HSPs)
chr6 (208-277)||(15927450-15927519)
[»] chr3 (1 HSPs)
chr3 (208-277)||(9159379-9159448)


Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 10994218 - 10993917
Alignment:
Q  19 agaaatgccatgaaccaagaagttcgatgcaaattgggtgggattattaggcttgttccatggaatcaattcttgatgcaccagaggaagaccaagaaac 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10994218 agaaatgccatgaaccaagaagttcgatgcaaattgggagggattattaggcttgttccatggaatcaattcttgatgcaccagaggaagaccaagaaac 10994119  T
Q  119 gctagtactatcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10994118 gctagtactatcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatc 10994019  T
Q  219 tcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10994018 tcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctg 10993919  T
Q  319 tg 320  Q
    ||    
T  10993918 tg 10993917  T

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Target: chr1; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 73 - 320
Target Start/End: Complemental strand, 11005480 - 11005233
Alignment:
Q  73 gttccatggaatcaattcttgatgcaccagaggaagaccaagaaacgctagtactatcatctctaacatcgtctgctggtatatcttgtggataaaggta 172  Q
    |||||||| ||||| || |||||| | |||||||||||||||||   |||||| || ||||||||| ||| || ||||||| ||||||||||||||||||    
T  11005480 gttccatgaaatcatttattgatgtatcagaggaagaccaagaacttctagtattaccatctctaaaatcctcagctggtagatcttgtggataaaggta 11005381  T
Q  173 aggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccat 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||    
T  11005380 aggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcacctggttttgtctgtatacaccat 11005281  T
Q  273 aatgccacaatcatcattttctttgccaatttcatttcttcatctgtg 320  Q
    || |||||||||||||||||||||||||||||||||||||||||||||    
T  11005280 aaagccacaatcatcattttctttgccaatttcatttcttcatctgtg 11005233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 77 - 320
Target Start/End: Original strand, 10901309 - 10901552
Alignment:
Q  77 catggaatcaattcttgatgcaccagaggaagaccaagaaacgctagtactatcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggc 176  Q
    |||| ||||| || |||||| | |||||||| |||| |||   |||||| ||||||||| || ||| || ||||||| ||||||||||||||||||||||    
T  10901309 catgaaatcatttattgatgtatcagaggaaaaccacgaacttctagtattatcatctcaaaaatcctcagctggtagatcttgtggataaaggtaaggc 10901408  T
Q  177 ttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatg 276  Q
    || |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10901409 ttcttaggcatttgcaaatccccatcttcttatgcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgagtacaccataatg 10901508  T
Q  277 ccacaatcatcattttctttgccaatttcatttcttcatctgtg 320  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  10901509 ccacaatcatcgttttctttgccaatttcatttcttcatctgtg 10901552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 173 - 310
Target Start/End: Original strand, 11032933 - 11033070
Alignment:
Q  173 aggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccat 272  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||| | |||||||||||||| |||||||||||||||||| | ||||||||||||     
T  11032933 aggcttattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggtttcgcctgaatacaccac 11033032  T
Q  273 aatgccacaatcatcattttctttgccaatttcatttc 310  Q
    || ||||| |||||||||||||||||||||||||||||    
T  11033033 aaagccactatcatcattttctttgccaatttcatttc 11033070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 128 - 320
Target Start/End: Original strand, 10979031 - 10979223
Alignment:
Q  128 atcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcact 227  Q
    |||||||| |||||| ||| |||||  |||||||  | ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| | ||||    
T  10979031 atcatctccaacatcctctactggtggatcttgtaaacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacact 10979130  T
Q  228 ttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtg 320  Q
    ||||||||||||||||| ||    ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| | |||||||    
T  10979131 ttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtg 10979223  T

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Target: chr1; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 155 - 320
Target Start/End: Original strand, 11010624 - 11010789
Alignment:
Q  155 atcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggt 254  Q
    |||||||||| ||| ||||||||||||||| || ||||| || ||||||||||||||||||||||| |  ||||||||||||||||||||||||  ||||    
T  11010624 atcttgtggacaaaagtaaggcttattaggaatctgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcatcaggt 11010723  T
Q  255 tttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtg 320  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| |  |||||||| | |||||||    
T  11010724 tttgtctgtatacaccataacgccacaatcatcattttctttgctagcttcatttcctgatctgtg 11010789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 156 - 307
Target Start/End: Original strand, 11007463 - 11007614
Alignment:
Q  156 tcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggtt 255  Q
    ||||||| || ||||| ||||| ||||||||||||||||||  |||||||||||||||||||||| | |||||||||||||| |||||||||||||||||    
T  11007463 tcttgtgcatcaaggtcaggctgattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggtt 11007562  T
Q  256 ttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcat 307  Q
    | |  ||||||||||| || ||||| ||||||||||||||||||||||||||    
T  11007563 tcgcttgaatacaccacaaagccactatcatcattttctttgccaatttcat 11007614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 119 - 320
Target Start/End: Original strand, 10932667 - 10932869
Alignment:
Q  119 gctagtactatcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatc 218  Q
    |||| |||||| ||||| |||||| ||| |||||  |||||||||| ||| ||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  10932667 gctactactattatctccaacatcctctactggtggatcttgtggacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatc 10932766  T
Q  219 t-caatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatct 317  Q
    | | |  ||||| |||||||||||||||||    || ||||| || |||||||| || ||||| ||||||||||||||||||||||||||||| | ||||    
T  10932767 tcctaaaactttttccattgaaggacgatcctcgggatttgtttgtatacaccacaaagccacgatcatcattttctttgccaatttcatttcctgatct 10932866  T
Q  318 gtg 320  Q
    |||    
T  10932867 gtg 10932869  T

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Target: chr1; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 127 - 320
Target Start/End: Original strand, 10914295 - 10914488
Alignment:
Q  127 tatcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcac 226  Q
    ||||||||| ||||||  ||| ||||  |||||||||| |||  |||||||||||||| |||||||| || ||||||||||||||||||||||| |  ||    
T  10914295 tatcatctccaacatctgctgttggtggatcttgtggacaaaaataaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaac 10914394  T
Q  227 tttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtg 320  Q
    ||| |||||||||||||||||    |||||||| || |||||||| || || |||||||||||||||||||||||||||||||| | |||||||    
T  10914395 tttttccattgaaggacgatcctctggttttgtttgtatacaccacaaagctacaatcatcattttctttgccaatttcatttcctgatctgtg 10914488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 155 - 320
Target Start/End: Original strand, 10903163 - 10903328
Alignment:
Q  155 atcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggt 254  Q
    |||||||||| ||| ||||||||||||||| ||||| || ||||||||||||| |||||||||||| |  |||||||||||||||||||||||    |||    
T  10903163 atcttgtggacaaaagtaaggcttattaggaatttgtaagtccccatcttctttttcaagcatctccaaaactttatccattgaaggacgatcctcgggt 10903262  T
Q  255 tttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtg 320  Q
    ||||| || |||||||| || |||||  |||||||||||||||||||||||||||| | |||||||    
T  10903263 tttgtttgtatacaccacaaagccacggtcatcattttctttgccaatttcatttcctgatctgtg 10903328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 155 - 320
Target Start/End: Complemental strand, 11028985 - 11028820
Alignment:
Q  155 atcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggt 254  Q
    |||||| ||| ||| ||||||||||||||| |||||||| || ||||||||||||||||||||||| |  |||||||||||||||||||||||    |||    
T  11028985 atcttgcggacaaaagtaaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcctctggt 11028886  T
Q  255 tttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtg 320  Q
    ||||| || |||||||| || ||| || |||||||||||||||||||||||||||| | |||||||    
T  11028885 tttgtttgtatacaccacaaagccgcagtcatcattttctttgccaatttcatttcctgatctgtg 11028820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 277
Target Start/End: Complemental strand, 9348872 - 9348803
Alignment:
Q  208 cttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgc 277  Q
    |||| |||||||| || ||||||| ||||| |||||||||||| ||||||  ||| ||||||||||||||    
T  9348872 cttcgagcatctctattactttattcattgcaggacgatcacttggttttaactgtatacaccataatgc 9348803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 9234385 - 9234322
Alignment:
Q  208 cttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacacca 271  Q
    |||||||||||||||  ||||| | |||||||||||||||||| |||||   ||||||||||||    
T  9234385 cttcaagcatctcaactactttgttcattgaaggacgatcactcggtttcaactgaatacacca 9234322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 9255351 - 9255310
Alignment:
Q  208 cttcaagcatctcaatcactttatccattgaaggacgatcac 249  Q
    ||||||||||||| |||||||||| |||||| ||||||||||    
T  9255351 cttcaagcatctctatcactttattcattgagggacgatcac 9255310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 9318613 - 9318572
Alignment:
Q  208 cttcaagcatctcaatcactttatccattgaaggacgatcac 249  Q
    ||||||||||||| |||||||| | |||||||||||||||||    
T  9318613 cttcaagcatctctatcactttgttcattgaaggacgatcac 9318572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 9319689 - 9319730
Alignment:
Q  208 cttcaagcatctcaatcactttatccattgaaggacgatcac 249  Q
    ||||||||||||| |||||||| | |||||||||||||||||    
T  9319689 cttcaagcatctctatcactttgttcattgaaggacgatcac 9319730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 9350006 - 9350047
Alignment:
Q  208 cttcaagcatctcaatcactttatccattgaaggacgatcac 249  Q
    ||||||||||||| |||||||| | |||||||||||||||||    
T  9350006 cttcaagcatctctatcactttgttcattgaaggacgatcac 9350047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 9384009 - 9384078
Alignment:
Q  208 cttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgc 277  Q
    |||||||||||||||  ||||| | ||||| |||||||||||| |||||   |||||||||||| |||||    
T  9384009 cttcaagcatctcaactactttgttcattgtaggacgatcactcggtttcaactgaatacaccaaaatgc 9384078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 277
Target Start/End: Complemental strand, 15927519 - 15927450
Alignment:
Q  208 cttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgc 277  Q
    ||||||||||||| |||||| | | |||||||||||||||||| ||||||   |||||||||||||||||    
T  15927519 cttcaagcatctctatcactctgttcattgaaggacgatcacttggttttaattgaatacaccataatgc 15927450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 9159379 - 9159448
Alignment:
Q  208 cttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgc 277  Q
    |||| |||||||| || ||||| | ||||| |||||||||||| ||||||  ||| ||||||||||||||    
T  9159379 cttcgagcatctctattactttgttcattgcaggacgatcacttggttttaactgtatacaccataatgc 9159448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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