View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11364_low_8 (Length: 304)

Name: NF11364_low_8
Description: NF11364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11364_low_8
NF11364_low_8
[»] chr6 (9 HSPs)
chr6 (1-287)||(2362931-2363217)
chr6 (1-281)||(2368683-2368963)
chr6 (111-280)||(2357623-2357792)
chr6 (7-278)||(2339856-2340127)
chr6 (28-278)||(2307175-2307425)
chr6 (1-281)||(2351306-2351586)
chr6 (112-161)||(2261501-2261550)
chr6 (168-232)||(2297122-2297186)
chr6 (111-175)||(14711559-14711623)
[»] chr3 (1 HSPs)
chr3 (109-287)||(4305629-4305807)
[»] chr4 (1 HSPs)
chr4 (10-229)||(5804360-5804579)


Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 2363217 - 2362931
Alignment:
Q  1 tcagtgtgaatcttccaaagattcaaaattaatcgtgttccattttttacatcatattcacctaaactgcaattctctgataattcacgaggcacagata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||| |||||||||||||||||||    
T  2363217 tcagtgtgaatcttccaaagattcaaaattaatcgtgttccatttcttacatcatatccacctaaattacaattctctgagaattcacgaggcacagata 2363118  T
Q  101 aagggtcaggtggatataatcttagtgtttctttgactatggcttgaaggtacaccaacttgtctatatctgactttcttacacacctctcttttccaac 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2363117 aagggccaggtggatataatcttagtgtttctttgactatggcttgaaggtacaccaacttgtctatatctgactttcttacacacctctcttttccaac 2363018  T
Q  201 ttgagcatcaagttcttcttttgcttttttcaatattagaggatttctaagtaacaaacatattgcccatgtaagggtaacgctagt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2363017 ttgagcatcaagttcttcttttgcttttttcaatattagaggatttctaagcaacaaacatattgcccatgtaagggtaacgctagt 2362931  T

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Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 2368963 - 2368683
Alignment:
Q  1 tcagtgtgaatcttccaaagattcaaaattaatcgtgttccattttttacatcatattcacctaaactgcaattctctgataattcacgaggcacagata 100  Q
    |||||||||||||| | ||||||||||||||| |||||||| ||| ||||||||||| || ||||| ||||||||||||| |||||||||||  | ||||    
T  2368963 tcagtgtgaatctttctaagattcaaaattaaccgtgttccttttcttacatcatatccatctaaattgcaattctctgagaattcacgaggtgccgata 2368864  T
Q  101 aagggtcaggtggatataatcttagtgtttctttgactatggcttgaaggtacaccaacttgtctatatctgactttcttacacacctctcttttccaac 200  Q
    ||||| ||| ||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||| || ||||||||||||||||||||||||    
T  2368863 aagggccagctggatataatcttagggtttctttgacaatggcttgaagatacaccaacttgtctatgtctgtctctcttacacacctctcttttccaac 2368764  T
Q  201 ttgagcatcaagttcttcttttgcttttttcaatattagaggatttctaagtaacaaacatattgcccatgtaagggtaac 281  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2368763 ttgagtatcaagttcttcttttgctttttccaatattagaggatttctaagtaacaaacatattgcccatgtaagggtaac 2368683  T

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Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 111 - 280
Target Start/End: Complemental strand, 2357792 - 2357623
Alignment:
Q  111 tggatataatcttagtgtttctttgactatggcttgaaggtacaccaacttgtctatatctgactttcttacacacctctcttttccaacttgagcatca 210  Q
    ||||||||||||||| |||||||||| ||| |||||||||||||||||||||| |||||| |||||| |||||||  | ||| ||||||| ||    |||    
T  2357792 tggatataatcttagggtttctttgattatcgcttgaaggtacaccaacttgtttatatccgactttgttacacatttatctcttccaacgtggaagtca 2357693  T
Q  211 agttcttcttttgcttttttcaatattagaggatttctaagtaacaaacatattgcccatgtaagggtaa 280  Q
    |||||| |||||||||||| |||| |  |||||||| | |||||||||||||||||||| ||||||||||    
T  2357692 agttctgcttttgctttttccaatgtatgaggatttttcagtaacaaacatattgcccaagtaagggtaa 2357623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 278
Target Start/End: Complemental strand, 2340127 - 2339856
Alignment:
Q  7 tgaatcttccaaagattcaaaattaatcgtgttccattttttacatcatattcacctaaactgcaattctctgataattcacgaggcacagataaagggt 106  Q
    |||||||||||||||||    |||||||| ||||| ||| | || | |||  |||||||| | ||||||| ||| |||||||| ||  | || | |||      
T  2340127 tgaatcttccaaagatttgtgattaatcgagttccctttataacttgataaccacctaaattacaattctttgagaattcacgtggtccggagagaggac 2340028  T
Q  107 caggtggatataatcttagtgtttctttgactatggcttgaaggtacaccaacttgtctatatctgactttcttacacacctctcttttccaacttgagc 206  Q
    | |||||||| ||||||||||||||||||||||| ||||||||||| | ||| || | ||||||  |||  |||| ||| |||||||| |||||||||||    
T  2340027 ccggtggatacaatcttagtgtttctttgactatagcttgaaggtatatcaatttatttatatcaaactcgcttaaacatctctctttgccaacttgagc 2339928  T
Q  207 atcaagttcttcttttgcttttttcaatattagaggatttctaagtaacaaacatattgcccatgtaagggt 278  Q
    |||||||||||||||||| |||| || ||  ||||||||  | |  | |||||||| |||||||||||||||    
T  2339927 atcaagttcttcttttgccttttccattacaagaggattattcaaaagcaaacatagtgcccatgtaagggt 2339856  T

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Target: chr6; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 28 - 278
Target Start/End: Complemental strand, 2307425 - 2307175
Alignment:
Q  28 attaatcgtgttccattttttacatcatattcacctaaactgcaattctctgataattcacgaggcacagataaagggtcaggtggatataatcttagtg 127  Q
    |||||||| ||||| ||| | |||| |||  | |||||| | |||||||| || |||||||||||  | || | |||  | ||||||||||||| |||||    
T  2307425 attaatcgagttccctttataacatgataacctcctaaagtacaattctccgagaattcacgaggtcctgaaagaggagcgggtggatataatcgtagtg 2307326  T
Q  128 tttctttgactatggcttgaaggtacaccaacttgtctatatctgactttcttacacacctctcttttccaacttgagcatcaagttcttcttttgcttt 227  Q
    ||||||||||||| |||||||||||   ||| || | |||||||||||  | |||||| |||||||| |||| |||||| || |||||||||||||||||    
T  2307325 tttctttgactatagcttgaaggtatgtcaatttatttatatctgactcacatacacatctctctttgccaatttgagcgtcgagttcttcttttgcttt 2307226  T
Q  228 tttcaatattagaggatttctaagtaacaaacatattgcccatgtaagggt 278  Q
    || || ||  ||||||||  | | || |||||||| |||||||||||||||    
T  2307225 ttccattacaagaggattgttcaatagcaaacatagtgcccatgtaagggt 2307175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 2351586 - 2351306
Alignment:
Q  1 tcagtgtgaatcttccaaagattcaaaattaatcgtgttccattttttacatcatattcacctaaactgcaattctctgataattcacgaggcacagata 100  Q
    ||||| ||||||||||||||||| |  ||||| || ||||| ||| | ||||  ||  |||| | | ||||||||||||| |||||||||||  | |  |    
T  2351586 tcagtttgaatcttccaaagatttagcattaaccgagttccttttctaacatggtaaccaccaatagtgcaattctctgagaattcacgaggtgcggcga 2351487  T
Q  101 aagggtcaggtggatataatcttagtgtttctttgactatggcttgaaggtacaccaacttgtctatatctgactttcttacacacctctcttttccaac 200  Q
     |||  | |||||||  |||||||| |||||||| ||||| ||||||||||| ||||||||  | ||||| ||||   |||||  ||| ||||| |||||    
T  2351486 gaggacctggtggatgcaatcttagggtttcttttactatagcttgaaggtataccaacttaccaatatccgactcgtttacaagcctttctttgccaac 2351387  T
Q  201 ttgagcatcaagttcttcttttgcttttttcaatattagaggatttctaagtaacaaacatattgcccatgtaagggtaac 281  Q
     ||||  ||||||||||||||||||||||||||||  ||||||||| | | ||  |||||||||||||||||||| |||||    
T  2351386 gtgagtgtcaagttcttcttttgcttttttcaatacaagaggatttttcaatagtaaacatattgcccatgtaagagtaac 2351306  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 2261501 - 2261550
Alignment:
Q  112 ggatataatcttagtgtttctttgactatggcttgaaggtacaccaactt 161  Q
    ||||| |||||||| |||||||||||||| |||||||| || ||||||||    
T  2261501 ggatacaatcttagggtttctttgactattgcttgaagatataccaactt 2261550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 2297186 - 2297122
Alignment:
Q  168 atctgactttcttacacacctctcttttccaacttgagcatcaagttcttcttttgcttttttca 232  Q
    |||||||| |||||||||  | |||||||||| ||| |  | |||||||||||||||||||||||    
T  2297186 atctgactctcttacacaattttcttttccaatttgtgtgttaagttcttcttttgcttttttca 2297122  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 14711559 - 14711623
Alignment:
Q  111 tggatataatcttagtgtttctttgactatggcttgaaggtacaccaacttgtctatatctgact 175  Q
    |||||| | |||||| ||||||||||| |  ||||||||||| ||||||||||  ||||||||||    
T  14711559 tggataaagtcttagcgtttctttgacaactgcttgaaggtataccaacttgttaatatctgact 14711623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 109 - 287
Target Start/End: Complemental strand, 4305807 - 4305629
Alignment:
Q  109 ggtggatataatcttagtgtttctttgactatggcttgaaggtacaccaacttgtctatatctgactttcttacacacctctcttttccaacttgagcat 208  Q
    |||||| |||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||| | |||||||||||||||| ||||||||    |    
T  4305807 ggtggacataaccttagggtttctttgactatcgcttgaaggtataccaacttgtctatatccgactcttttacacacctctctttgccaacttggatgt 4305708  T
Q  209 caagttcttcttttgcttttttcaatattagaggatttctaagtaacaaacatattgcccatgtaagggtaacgctagt 287  Q
    |||||||||||| ||||||||  | ||  |||||||||   ||||||||||| ||||||||| ||||||| || |||||    
T  4305707 caagttcttcttgtgctttttctattacaagaggattttccagtaacaaacacattgcccatataagggtgacactagt 4305629  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 5804360 - 5804579
Alignment:
Q  10 atcttccaaagattcaaaattaatcgtgttccattttttacatcatattcacctaaactgcaattctctgataattcacgaggcacagataaagggtcag 109  Q
    ||||||||||||||    |||||||| ||||| ||| | |||| |||  |||||||| ||||||||||||| |||||||||||  |   || |||  |||    
T  5804360 atcttccaaagatttgtgattaatcgagttccttttgtaacatgataaccacctaaagtgcaattctctgagaattcacgaggtccgcctagaggagcag 5804459  T
Q  110 gtggatataatcttagtgtttctttgactatggcttgaaggtacaccaacttgtctatatctgactttcttacacacctctcttttccaacttgagcatc 209  Q
     |||||| ||||| |||||||| |||||||| ||||||||||| ||||||||   |||||||||||   | ||| | |||||| | ||||| ||||  ||    
T  5804460 atggatacaatctcagtgtttccttgactatagcttgaaggtataccaacttaattatatctgactcattcacaaatctctctctaccaacatgagtgtc 5804559  T
Q  210 aagttcttcttttgcttttt 229  Q
    ||||||||||||||||||||    
T  5804560 aagttcttcttttgcttttt 5804579  T

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