View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11365_high_3 (Length: 325)
Name: NF11365_high_3
Description: NF11365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11365_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 39927005 - 39926693
Alignment:
| Q |
1 |
atacatacgatgtttggctatctttactggttattaggtaacgccagttactgttgagatgtaaaattgattattctaaagacgattcgagaaagtggtt |
100 |
Q |
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| T |
39927005 |
atacatacgatgtttggctatctttactggttattaggtaacgccagttactgttgagatgtaaaattgattattctaaagacgattcgagaaagtggtt |
39926906 |
T |
|
| Q |
101 |
tattatctcatgaaatttttgtttgagaaataaattttcgctttggttagatgaagatgatcatgaatgaatctactatgccnnnnnnnnnnnnnatgtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |
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| T |
39926905 |
tattatctcatgaaatttttgtttgagaaataaattttcgctttggttatatgaaaatgatcatgaatgaatctactatgcctttttttctttttatgtc |
39926806 |
T |
|
| Q |
201 |
aattaacgagtttgtcattgaagggactatcttgtccaactcgaaaaaattggaaaagaaatgacagcatggtagccttaagatgtaaaattctattaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39926805 |
aattaacgagtttgtcattgaagggactatcttgtccaactcgaaaaaattggaaaagaaatgacagcatggtagccttaagatgtaaaattctattaac |
39926706 |
T |
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| Q |
301 |
ctttattgatatt |
313 |
Q |
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||||||||||||| |
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| T |
39926705 |
ctttattgatatt |
39926693 |
T |
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