View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11365_low_1 (Length: 350)
Name: NF11365_low_1
Description: NF11365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11365_low_1 |
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| [»] chr1 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 153 - 350
Target Start/End: Complemental strand, 46102818 - 46102621
Alignment:
| Q |
153 |
gacatttttatattacccaaatttctcaaactcattgcccattgtgttgcacaaatagtctctgacaaggtttggtgatttttcatcagctgagaattga |
252 |
Q |
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| T |
46102818 |
gacatttttatattacccaaatttctcaaactcattgcccattgtgttgcacaaatagtctctgacaaggtttggtgatttttcatcagctgagaattga |
46102719 |
T |
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| Q |
253 |
aaggaaagtgtctctttccaaggaagtttggaagagaatctgccagtgaaactactagcataaccacagtgctcccctgtttttctctgagctctctg |
350 |
Q |
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| T |
46102718 |
aaggaaagtgtctctttccaaggaagcttggaagagaatctgccagtgaaactactagcataaccacagtgctcccctgtttttctctgagctctctg |
46102621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 46102971 - 46102895
Alignment:
| Q |
1 |
gcagtttttaatcagtattaccc-tctttttcccacttaatatgtgataagttaatttgtcactagactctttgaca |
76 |
Q |
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| T |
46102971 |
gcagtttttaatcagtattacccctctttttcccacttaatatgtgataagttaatttgtcactagactctttgaca |
46102895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 166 - 350
Target Start/End: Original strand, 22553784 - 22553968
Alignment:
| Q |
166 |
tacccaaatttctcaaactcattgcccattgtgttgcacaaatagtctctgacaaggtttggtgatttttcatcagctgagaattgaaaggaaagtgtct |
265 |
Q |
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| T |
22553784 |
tacccaaattcctcaaaatcttcccctaatgtgttgcaaaggtagtctttaacaatatttggtgagtttttctcatctgaaaattgaaaagaaagtgttt |
22553883 |
T |
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| Q |
266 |
ctttccaaggaagtttggaagagaatctgccagtgaaactactagcataaccacagtgctcccctgtttttctctgagctctctg |
350 |
Q |
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| T |
22553884 |
ctttccatggaagttttgaggagaatcttccagtgaaactactagcataaccacaatgttctcctattttcctctgtgctctctg |
22553968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 320
Target Start/End: Original strand, 12873931 - 12874000
Alignment:
| Q |
251 |
gaaaggaaagtgtctctttccaaggaagtttggaagagaatctgccagtgaaactactagcataaccaca |
320 |
Q |
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| T |
12873931 |
gaaaagaaagtgtttccttccaaggaagtttggaagaaaatcttccaatgaaactattagcataaccaca |
12874000 |
T |
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