View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11366_high_1_N (Length: 366)
Name: NF11366_high_1_N
Description: NF11366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11366_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 21 - 350
Target Start/End: Original strand, 5351915 - 5352243
Alignment:
| Q |
21 |
tcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttaccctt |
120 |
Q |
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| T |
5351915 |
tcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttaccctt |
5352014 |
T |
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| Q |
121 |
caacttcaaggcaaaaattgaaacaactttaagttccataaattgcttcaatcgtgatttttattcaattaataaaacgtatttgttctttatttacatt |
220 |
Q |
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| T |
5352015 |
caacttcaaggcaaaaattgaaacaactttaagttccataaattgcttcaatcgtgatttttattcaattaaaaaaatgta-ttgttctttatttgcatt |
5352113 |
T |
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| Q |
221 |
tagaattttatttgcattgttgccttgtcctgtgttttatttgcaatgttacgttgaagtttgttaaaattccatgtattattatgaaataatagtcttg |
320 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5352114 |
tagaattttatttgcattgttgccttgtcctgtgtttgatttacaatgttatgttgaagtttgttaaaattccatgtattattatgaaataatagtcttg |
5352213 |
T |
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| Q |
321 |
tcacattattcattctggtattacacaggt |
350 |
Q |
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| T |
5352214 |
tcacattattcattctggtattacataggt |
5352243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 5344897 - 5345024
Alignment:
| Q |
21 |
tcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttaccctt |
120 |
Q |
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| T |
5344897 |
tcagcctccagcaaaatttaatagtgatggtgatttgattgatgaagatgctaagaataggttgttggcaattctgttgtccttgaaggcatttactctg |
5344996 |
T |
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| Q |
121 |
caacttcaaggcaaaaattgaaacaact |
148 |
Q |
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| T |
5344997 |
caacttcaaggcaaaaattgaaacaact |
5345024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 5325119 - 5325075
Alignment:
| Q |
98 |
tgtccttgaaggcatttacccttcaacttcaaggcaaaaattgaa |
142 |
Q |
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| T |
5325119 |
tgtccttgaaggaatttacccttaaacttcaaggcagaaattgaa |
5325075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 331
Target Start/End: Original strand, 5345382 - 5345433
Alignment:
| Q |
277 |
aagtttgttaaaattccatgtattattatgaaataatagtcttgtcacattattc |
331 |
Q |
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| T |
5345382 |
aagtttgttaaaattccatgca--att-tgaaataatagtcttgtcacattattc |
5345433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 5338147 - 5338089
Alignment:
| Q |
90 |
agttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaattgaaacaact |
148 |
Q |
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| T |
5338147 |
agttcttgtgtccttaaaggaatttacccttcagcttcaaggttaaatttgaaacaact |
5338089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 14535375 - 14535283
Alignment:
| Q |
45 |
tgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaa |
137 |
Q |
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| T |
14535375 |
tgatggcgatttgattgatgaagaggctaagaataagttgaaacaagttcttttatctttgcaggcatttactctaaggcttcaaggcaaaaa |
14535283 |
T |
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