View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11366_low_1 (Length: 401)
Name: NF11366_low_1
Description: NF11366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11366_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 38096932 - 38096552
Alignment:
| Q |
16 |
catgttcacaaatttccattatcaatcatatat---gatgacaagcttcatcgacagaacagtaacgcaaaaaacactgtaattaaataattataaa--- |
109 |
Q |
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| T |
38096932 |
catgttcacaaatttccattatcaatcatatatcatgatgacaagcttcatcggcagaacagtaatgcaaaaaacactgtaattaaataattataaaaat |
38096833 |
T |
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| Q |
110 |
-------------gtcacaaatggagaaactaaatttgatacatgtaatattttaccgaattttactaacatctggtcaaactccaaatcacatcatcac |
196 |
Q |
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| T |
38096832 |
aataattaaaaaagtcacaaatggagaaactaaatttgattcatgtaatattttaccgaattttactaacatctggtcaaactccagatcacataatc-- |
38096735 |
T |
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| Q |
197 |
atcatctctttcccttgaaaatcgaatgattaacaccaaataaatattatatttacaacaaatttaagagaaaatttatcagtacgaattatgagtacat |
296 |
Q |
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| T |
38096734 |
------tctttcccttgaaaatggaatgattaacaccaaacaaatattatatttacaacaaatttcagagaaaatttatcagtatgaattatgagtacat |
38096641 |
T |
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| Q |
297 |
gactcttgaatttgaatcaacccaaagttgttttttaatttgtgatgcataagattttagtaactccaaaagatttttgagttgtaagt |
385 |
Q |
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| T |
38096640 |
gactcttgaatttgaatcaacccaaagttgttttttaatttgtgatgcataagattttagtaactccaaaagatttttgagttgtaagt |
38096552 |
T |
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