View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11367_high_1 (Length: 731)

Name: NF11367_high_1
Description: NF11367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11367_high_1
NF11367_high_1
[»] chr3 (1 HSPs)
chr3 (19-718)||(12545926-12546625)


Alignment Details
Target: chr3 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 19 - 718
Target Start/End: Complemental strand, 12546625 - 12545926
Alignment:
Q  19 ccaccatccaacagctacaagaatcaatcctccaactcacagcagccttcacaaatttcaaaaccacccaagaccaaagacatgaagactacatcaactc 118  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12546625 ccaccatccaaaagctacaagaatcaatcctccaactcacagcagccttcacaaatttcaaaaccacccaagaccaaagacatgaagactacatcaactc 12546526  T
Q  119 cctgcacaccctacaatcacagatccctacccccagccaaggttctcctagtattaacactggaaaccaagaccttacccttaaaccacctaaactgcgc 218  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12546525 cctgcacaccctacaatcacagatccctacccccaaccaaggttctcctagtattaacactggaaaccaagaccttacccttaaaccacctaaactgcgc 12546426  T
Q  219 cttttaccatttgatggtacaaaccccctcgactgggtttttcaagccaatcaannnnnnnctcattattccatacccacccatcaacgtttagctcacg 318  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||| |||||||||||    
T  12546425 cttttaccatttgagggtacaaaccccctcgactgggtttttcaagccaatcaatttttctctcattattccatacccaaccatcaacatttagctcacg 12546326  T
Q  319 tggccggatatatgaccggtgacgctttgggatggtaccaatggatgtttaacaaccatctcctctctacatgggaagcgttcacaagagctctagaggt 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  12546325 tggccggatatatgaccggtgacgctttgggatggtaccaatggatgtttaacaactatctcctctctacatgggaagcgtttacaagagctctagaggt 12546226  T
Q  419 tcgatttggtccctcggcgtacgacaaccatcagcaagctctcttcaaactcaaacagactgcatctgtcgccgaatatcaacgcgaattcgaacgcctc 518  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  12546225 tcgttttggtccctcggcgtacgacaaccatcagcaagctctcttcaaactcaaacagactgcatctgtcgccgactatcaacacgaattcgaacgcctc 12546126  T
Q  519 tgcaatagggtaactggtctttctccccttgctattgttgannnnnnngtttctggtctcaaatttcatatccaaaatgaattagctgtccatcagccta 618  Q
    ||||||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||| |||||||| ||||||||| ||||    
T  12546125 tgcaatagggtaactggtctttctcccattgctattgttgattgttttgtttctggtctcaaatttcatatccaaagtgaattagttgtccatcaaccta 12546026  T
Q  619 cttcaatttcccaggccattggccttgcaaaactaattgaatctaaagctactgctgtacgaccttttcaaaccacaaaaaaccctaaccaaaaaccacc 718  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12546025 cttcaatttcccaggccattggccttgcaaaactaattgaatctaaagctactgttgtacgaccttttcaaaccacaaaaaaccctaaccaaaaaccacc 12545926  T

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