View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11367_high_10 (Length: 295)
Name: NF11367_high_10
Description: NF11367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11367_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 19144797 - 19145064
Alignment:
| Q |
18 |
agtatgtcggggtcaccagccctagtgactgtcacaagggtaaacatggaaataatgagtgagacaacaactttcaaggtagaggaagacatgnnnnnnn |
117 |
Q |
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| T |
19144797 |
agtatgtcagggtcaccagccctagtgattgtcacaagggtaaaagtggaaatgatgagtgagagaacaactttcaaggtagaggaagacatgttttttt |
19144896 |
T |
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| Q |
118 |
agtatgattataatgttgaagaactttgaagatgttgttggatgagatttgaagaattttatgtgtgaggatatatatagggaggggtttggttctatag |
217 |
Q |
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| T |
19144897 |
agtatgattataatgttgaagaactttgaagatgttgttggatgagatttgaagaatgttatgtgtgaggatatatatagggaggggtttggttctatag |
19144996 |
T |
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| Q |
218 |
ttggaaattgtgaggggg-gaaaagggtttgttcttgtattctatgatctatctaatgcaggcttcat |
284 |
Q |
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| T |
19144997 |
ttgaaaattttgagggggaaaaaagggtttgttcttgtattctatgatctatctaatgcaggcttcat |
19145064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 19148196 - 19147934
Alignment:
| Q |
18 |
agtatgtcggggtcaccagccctagtgactgtcacaagggtaaacatggaaataatgagtgagacaacaactttcaaggtagaggaagacatg-nnnnnn |
116 |
Q |
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| T |
19148196 |
agtatgtcggggtcaccagccctagtgactgtcacaagggtaaacgtggaaataatgagtgagagaacaactttcaagctagaggaagacatgttttttt |
19148097 |
T |
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| Q |
117 |
nagtatg---------------attataatgttgaagaactttgaagatgttgttggatgagatttgaagaattttatgtgtgaggatatatatagggag |
201 |
Q |
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| T |
19148096 |
tagtatgattataataattataattataatattgaagaactttgaagatg-tgttggatgagatttgaagagtgttatgggtgaggatatatataggga- |
19147999 |
T |
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| Q |
202 |
gggtttggttctatagttggaaattgtgaggggggaaaagggtttgttcttgtattctatgatct |
266 |
Q |
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| T |
19147998 |
gggtttggttcaatggttataaattgtgaagggaaaaaggattttgttcttgtattctatgatct |
19147934 |
T |
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