View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11367_high_11 (Length: 294)
Name: NF11367_high_11
Description: NF11367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11367_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 24694987 - 24694696
Alignment:
| Q |
1 |
tttcattatctattagtattgatgttcgttaatggcttggaccgagatcctaaaatgcaaattgtcctctttaatctcttagttgcttttttccgctatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
24694987 |
tttcattatctattagtattgatgttcgttaatggcttggaccgagatcctaaaatgcaaattgtcctctttaacctcttagttgct-ttttccgctatg |
24694889 |
T |
|
| Q |
101 |
ttagtattataacgaggaccaatgtgttaatatttcgtcaaggaaattttaattgt---------------aacatttagattattttcttatggagttc |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24694888 |
ttagtattataacgaggaccaatgtgttaatatttcgtcaaggaaattttaattgtaataatatttaggtaaacatttagattattttcttatggagttc |
24694789 |
T |
|
| Q |
186 |
tataacgctctttattttcatagtgtgtgaccactgaccacgagccttcattttcttaattagccttatagtacaatcggtcgtgtcctttat |
278 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24694788 |
tataacgctctttatttttatagtgtgtgaccactgaccacgagccttcattttcttaattaggcttatagtacaatcggtcgtgtcctttat |
24694696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 24707328 - 24707271
Alignment:
| Q |
88 |
tttttccgctatgttagtattataacgaggaccaatgtgttaatatttcgtcaaggaa |
145 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
24707328 |
tttttccgttatgttagtattataacgaggatcaatgtgttaatatttggtcgaggaa |
24707271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 24707466 - 24707395
Alignment:
| Q |
1 |
tttcattatctattagtattgatgttcgttaatggcttggaccgagatcctaaaatgcaaattgtcctcttt |
72 |
Q |
| |
|
||||||| |||||| |||| |||| | ||||||| ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
24707466 |
tttcattttctatttgtatagatgcttgttaatgatttggaccgagatcctaagatgcaaattgtcttcttt |
24707395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 24707188 - 24707150
Alignment:
| Q |
222 |
accacgagccttcattttcttaattagccttatagtaca |
260 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24707188 |
accatgagccttcattttcttaattagccttatagtaca |
24707150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University