View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11367_high_14 (Length: 252)
Name: NF11367_high_14
Description: NF11367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11367_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 8718572 - 8718335
Alignment:
| Q |
1 |
aaactccatacgtccttatagaatattatcaatgacaacaaataaaaatgccaacacaaattccacaacaacagccaacacttattcttcgaaatgcata |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
8718572 |
aaactccatatgtccttatagaatattatcaatgacaacaaataaaaatgccaacacaaattccacaacaacagccaacacttattcgtcgaaatgcaga |
8718473 |
T |
|
| Q |
101 |
cttggattaggccagtaccaatccacaaatgccagctaaataacgcgaattggaatcccacgatattttcacgacgtgttttccatcaaaagcagacttg |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8718472 |
cttggattaggcca---ccaatccacaaatgccagctaaataacgggaattggaatcccacgatattttcacgacgtgttttccatcaaaagcagacttg |
8718376 |
T |
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| Q |
201 |
gattaggcaccctcctcttgtttgttgttgtttcctttctt |
241 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||| |
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| T |
8718375 |
gattaggccccctcctcttgtttgttgttgtttccattctt |
8718335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 8672260 - 8672078
Alignment:
| Q |
1 |
aaactccatacgtccttatagaatattatcaatgacaacaaataaaaatgccaacacaaattccacaacaacagccaacacttattcttcgaaatgcata |
100 |
Q |
| |
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|||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | |
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| T |
8672260 |
aaactccatatgtccttatagaatattgtcaacgacaacaaataaaaatgccaacacaaattccacaacaacagctaacacttattcgtcgaaatgcaga |
8672161 |
T |
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| Q |
101 |
cttggattaggccagtaccaatccacaaatgccagctaaataacgcgaattggaatcccacgatattttcacgacgtgttttccat |
186 |
Q |
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|| |||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8672160 |
ctaggattaggcc---accaatccttaaatgcaggctaaataacgcgaattggaatcccacgatattttcacgacgtgtttcccat |
8672078 |
T |
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