View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11367_high_3 (Length: 458)
Name: NF11367_high_3
Description: NF11367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11367_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 111 - 271
Target Start/End: Original strand, 8174717 - 8174878
Alignment:
| Q |
111 |
aaataagcaaagcacttaacaaaattcactcctaactagacaacttttctataatcattgttcgcaacaagcaagaacaactcagtttcaataagtctag |
210 |
Q |
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| T |
8174717 |
aaataagcaaagcacttaacaaaattcactcctaaatagacaacttttctataatcattgttcgcaacaagcaagaacaactcagtttcaataagtctag |
8174816 |
T |
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| Q |
211 |
gcttgttaaccttgatccatcaactttgtaagagtcatccaagccaa-tcatccataattga |
271 |
Q |
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| T |
8174817 |
gcttgttaaccttgatccatcaactttgcaagagtcatccaagccaatttatccataattga |
8174878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 280 - 449
Target Start/End: Original strand, 8176040 - 8176208
Alignment:
| Q |
280 |
gtcaaaacccaccggaaggtcgcaaaaagtctcacgggaagctttattcaacggtagcacaaggaagtatttatcttttaacaatggcagaga-ttagag |
378 |
Q |
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| T |
8176040 |
gtcaaaacccaccggtaggtcgcaaaaagtctcacgggaagctttattcaacggtagcacaaggaagtatttatcttttaacaatggcagagagttagag |
8176139 |
T |
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| Q |
379 |
ttaacttcaaagaaattcttgtcttgccttaaagacacaaatccatgtcggcgtccagagccagtctctgc |
449 |
Q |
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| T |
8176140 |
ttaacttcaaagaaattcttgtcttgccttaaag--acaaacctatgtgggcggcaagagccagtctctgc |
8176208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 8173246 - 8173341
Alignment:
| Q |
18 |
tcatctaagtgatatgtggcatcatatatgtatttaaagtgattatttat-agattatgcttatttgaacaacgcacatgagaagttgaccattaa |
112 |
Q |
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| T |
8173246 |
tcatctaagtgatatgtggcatcatatatgtatttaaaggggttattttttagattatgcttatttgaacaacgcacatgagaagttgaccattaa |
8173341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 48775334 - 48775276
Alignment:
| Q |
54 |
aagtgattatttatagattatgcttatttgaacaacgcacatgagaagttgaccattaa |
112 |
Q |
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| T |
48775334 |
aagtgattatttttagattcagcttattcgaacaacacaaacgagaagttgaccattaa |
48775276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 30534595 - 30534543
Alignment:
| Q |
53 |
aaagtgattatttatagattatgcttatttgaacaacgcacatgagaagttga |
105 |
Q |
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| T |
30534595 |
aaagtgattatttttagattatgcttatttgaataacgcaaatgagaagttga |
30534543 |
T |
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