View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11367_high_7 (Length: 371)

Name: NF11367_high_7
Description: NF11367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11367_high_7
NF11367_high_7
[»] chr6 (3 HSPs)
chr6 (10-363)||(20602435-20602788)
chr6 (183-277)||(34763959-34764053)
chr6 (60-129)||(34763836-34763905)
[»] chr8 (3 HSPs)
chr8 (31-351)||(2308197-2308517)
chr8 (31-351)||(2313391-2313711)
chr8 (30-337)||(25817947-25818254)
[»] scaffold1235 (1 HSPs)
scaffold1235 (31-292)||(1676-1937)
[»] chr4 (1 HSPs)
chr4 (31-292)||(28402194-28402455)
[»] chr3 (1 HSPs)
chr3 (31-292)||(493201-493462)
[»] chr1 (2 HSPs)
chr1 (31-292)||(8320446-8320707)
chr1 (60-277)||(29457769-29457986)
[»] chr5 (1 HSPs)
chr5 (31-292)||(29736806-29737067)
[»] chr2 (3 HSPs)
chr2 (31-292)||(22994259-22994520)
chr2 (63-129)||(29218795-29218861)
chr2 (63-129)||(29332094-29332160)


Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 363
Target Start/End: Complemental strand, 20602788 - 20602435
Alignment:
Q  10 tgcttgatcgtgactccacgctttgttttcttgatgcccacgaaaccagagtttcaccaaggaacacacattgtcctgccatggatttcctgtcatctac 109  Q
    |||||||||||||| ||||  ||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||    
T  20602788 tgcttgatcgtgacaccactatttgttttcttgatgccaacgaaaccagagtttcaccaatgaagacacattgtcctgccatggatttcctttcatctac 20602689  T
Q  110 actagtggcccaatctgcattagagaacccggaaatatcaagatcagttgagggtttgatatgcagacatagatttgttgtgccatggagatatcttagt 209  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  20602688 actagtggcccaatctgcatcagagaacccgggaatatcaagatcagttgagggtttgatatgcagacatagatttgttgtgtcatggagatatcttaat 20602589  T
Q  210 attctttttattccttgccagtgatctgtggttggcaaactcatgtattgactgagtttgttgacagaaaaagctatgtcaggcctggtgttggttaggt 309  Q
    |||||||||||||||||  |||||| ||||||||| |||||| || |||||| ||||||||||| | |||| | |||||||||||| |||||||||||||    
T  20602588 attctttttattccttgatagtgatttgtggttgggaaactcgtgcattgaccgagtttgttgagaaaaaatgttatgtcaggcctagtgttggttaggt 20602489  T
Q  310 actgcaatgcacctatagcctgtctatatagtgtaggattggcctttgcttctc 363  Q
    ||||||||  ||||||||||| ||||||| ||||||||||| || ||| |||||    
T  20602488 actgcaatctacctatagcctatctatatggtgtaggattgtccattggttctc 20602435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 34763959 - 34764053
Alignment:
Q  183 tttgttgtgccatggagatatcttagtattctttttattccttgccagtgatctgtggttggcaaactcatgtattgactgagtttgttgacaga 277  Q
    ||||||||||| || |||||||| |  ||||| |||||||||||||| || || || || ||| | ||||| |||||||| |||||||| |||||    
T  34763959 tttgttgtgccttgtagatatctcataattctctttattccttgccaatgttcagtagtgggcgagctcatatattgacttagtttgttcacaga 34764053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 34763836 - 34763905
Alignment:
Q  60 gtttcaccaaggaacacacattgtcctgccatggatttcctgtcatctacactagtggcccaatctgcat 129  Q
    ||||||||||| || || || |||||| |||||||||| |||||||||| ||| || |||||||| ||||    
T  34763836 gtttcaccaagaaaaacgcaatgtcctcccatggattttctgtcatctatacttgtagcccaatcagcat 34763905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 31 - 351
Target Start/End: Complemental strand, 2308517 - 2308197
Alignment:
Q  31 tttgttttcttgatgcccacgaaaccagagtttcaccaaggaacacacattgtcctgccatggatttcctgtcatctacactagtggcccaatctgcatt 130  Q
    |||| |||||||| ||||| |||| ||   |||||||||||||||||||||| |||||||| || || || ||||||   || || |||||||||||||     
T  2308517 tttgctttcttgaagcccaagaaatcaagttttcaccaaggaacacacattgacctgccatagactttctatcatctgtgcttgttgcccaatctgcatc 2308418  T
Q  131 agagaacccggaaatatcaagatcagttgagggtttgatatgcagacatagatttgttgtgccatggagatatcttagtattctttttattccttgccag 230  Q
     |||||||| |  || |||||||||||||| ||||| || ||||  | ||| |||||||| ||||||||||| || |||||||| |||||||||||||||    
T  2308417 tgagaaccctgctatgtcaagatcagttgatggtttaatgtgcaagcctaggtttgttgtaccatggagatacctcagtattctctttattccttgccag 2308318  T
Q  231 tgatctgtggttggcaaactcatgtattgactgagtttgttgacagaaaaagctatgtcaggcctggtgttggttaggtactgcaatgcacctatagcct 330  Q
    ||||||||||||||  | |||||||||||||| ||||||||||||| ||| ||||||||||| ||  ||||||||| ||| || ||||||||||||||||    
T  2308317 tgatctgtggttggagagctcatgtattgactaagtttgttgacagcaaaggctatgtcaggtcttctgttggttacgtattgtaatgcacctatagcct 2308218  T
Q  331 gtctatatagtgtaggattgg 351  Q
    |||| || |||||||||||||    
T  2308217 gtctgtagagtgtaggattgg 2308197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 31 - 351
Target Start/End: Complemental strand, 2313711 - 2313391
Alignment:
Q  31 tttgttttcttgatgcccacgaaaccagagtttcaccaaggaacacacattgtcctgccatggatttcctgtcatctacactagtggcccaatctgcatt 130  Q
    |||| |||||||| ||||| |||| ||   |||||||||||||||||||||| |||||||| || || || ||||||   || || |||||||||||||     
T  2313711 tttgctttcttgaagcccaagaaatcaagttttcaccaaggaacacacattgacctgccatagactttctatcatctgtgcttgttgcccaatctgcatc 2313612  T
Q  131 agagaacccggaaatatcaagatcagttgagggtttgatatgcagacatagatttgttgtgccatggagatatcttagtattctttttattccttgccag 230  Q
     |||||||| |  || |||||||||||||| ||||| || ||||  | ||| |||||||| ||||||||||| || |||||||| |||||||||||||||    
T  2313611 tgagaaccctgctatgtcaagatcagttgatggtttaatgtgcaagcctaggtttgttgtaccatggagatacctcagtattctctttattccttgccag 2313512  T
Q  231 tgatctgtggttggcaaactcatgtattgactgagtttgttgacagaaaaagctatgtcaggcctggtgttggttaggtactgcaatgcacctatagcct 330  Q
    ||||||||||||||  | |||||||||||||| ||||||||||||| ||| ||||||||||| ||  ||||||||| ||| || ||||||||||||||||    
T  2313511 tgatctgtggttggagagctcatgtattgactaagtttgttgacagcaaaggctatgtcaggtcttctgttggttacgtattgtaatgcacctatagcct 2313412  T
Q  331 gtctatatagtgtaggattgg 351  Q
    |||| || |||||||||||||    
T  2313411 gtctgtagagtgtaggattgg 2313391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 30 - 337
Target Start/End: Complemental strand, 25818254 - 25817947
Alignment:
Q  30 ctttgttttcttgatgcccacgaaaccagagtttcaccaaggaacacacattgtcctgccatggatttcctgtcatctacactagtggcccaatctgcat 129  Q
    |||||||| ||||| | ||| |||| ||| |||||||||||||| |||||||||||||| |||||||| || ||||| |  || || ||||| |||||||    
T  25818254 ctttgtttccttgaagaccaagaaatcagtgtttcaccaaggaaaacacattgtcctgctatggattttctatcatcaatgcttgtagcccagtctgcat 25818155  T
Q  130 tagagaacccggaaatatcaagatcagttgagggtttgatatgcagaca-tagatttgttgtgccatggagatatcttagtattctttttattccttgcc 228  Q
      ||||| ||   |||||| | |||||| || || || |||||||  || ||| ||| |||| || || ||||| ||||| || |||||||||| |||||    
T  25818154 ctgagaatccaacaatatctaaatcagtagaaggcttaatatgcaagcaatag-tttattgtaccttgtagataccttaggatcctttttattcattgcc 25818056  T
Q  229 agtgatctgtggttggcaaactcatgtattgactgagtttgttgacagaaaaagctatgtcaggcctggtgttggttaggtactgcaatgcacctatagc 328  Q
    | |||||  |||||||  | |||||||||||||| |  ||||| || |||||||| |||||||| |  ||||||||||| || || ||||| ||||||||    
T  25818055 aatgatcaatggttggagagctcatgtattgactcaacttgtttactgaaaaagcaatgtcagggcgtgtgttggttagatattgtaatgctcctatagc 25817956  T
Q  329 ctgtctata 337  Q
     ||||||||    
T  25817955 ttgtctata 25817947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1235 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold1235
Description:

Target: scaffold1235; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 31 - 292
Target Start/End: Complemental strand, 1937 - 1676
Alignment:
Q  31 tttgttttcttgatgcccacgaaaccagagtttcaccaaggaacacacattgtcctgccatggatttcctgtcatctacactagtggcccaatctgcatt 130  Q
    ||||||||||||| | ||| || |  || ||||||||||||||||||||||| || ||||||||||| |||||||| | |||||||||||| |||||||     
T  1937 tttgttttcttgaggaccaagagatgagtgtttcaccaaggaacacacattgaccagccatggattttctgtcatcaatactagtggcccagtctgcatc 1838  T
Q  131 agagaacccggaaatatcaagatcagttgagggtttgatatgcagacatagatttgttgtgccatggagatatcttagtattctttttattccttgccag 230  Q
    ||| || || |  ||||| |  ||||| || || ||||| ||||| ||   |||  | ||||| ||||||||||| |  ||||||||||| ||||||||     
T  1837 agaaaaacctgttatatccaagtcagtggatggcttgatgtgcaggcaataattgatggtgccttggagatatctcaagattctttttataccttgccaa 1738  T
Q  231 tgatctgtggttggcaaactcatgtattgactgagtttgttgacagaaaaagctatgtcagg 292  Q
    || || ||||| ||  |||||||||||||||||||||| || |||||||| |||||||||||    
T  1737 tggtcagtggtaggtgaactcatgtattgactgagtttattaacagaaaaggctatgtcagg 1676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 31 - 292
Target Start/End: Complemental strand, 28402455 - 28402194
Alignment:
Q  31 tttgttttcttgatgcccacgaaaccagagtttcaccaaggaacacacattgtcctgccatggatttcctgtcatctacactagtggcccaatctgcatt 130  Q
    ||||||||||||| | ||| || |  || ||||||||||||||||||||||| || ||||||||||| |||||||| | |||||||||||| |||||||     
T  28402455 tttgttttcttgaggaccaagagatgagtgtttcaccaaggaacacacattgaccagccatggattttctgtcatcaatactagtggcccagtctgcatc 28402356  T
Q  131 agagaacccggaaatatcaagatcagttgagggtttgatatgcagacatagatttgttgtgccatggagatatcttagtattctttttattccttgccag 230  Q
    ||| || || |  ||||| |  ||||| || || ||||| ||||| ||   |||  | ||||| ||||||||||| |  ||||||||||| ||||||||     
T  28402355 agaaaaacctgttatatccaagtcagtggatggcttgatgtgcaggcaataattgatggtgccttggagatatctcaagattctttttataccttgccaa 28402256  T
Q  231 tgatctgtggttggcaaactcatgtattgactgagtttgttgacagaaaaagctatgtcagg 292  Q
    || || ||||| ||  |||||||||||||||||||||| || |||||||| |||||||||||    
T  28402255 tggtcagtggtaggtgaactcatgtattgactgagtttattaacagaaaaggctatgtcagg 28402194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 31 - 292
Target Start/End: Complemental strand, 493462 - 493201
Alignment:
Q  31 tttgttttcttgatgcccacgaaaccagagtttcaccaaggaacacacattgtcctgccatggatttcctgtcatctacactagtggcccaatctgcatt 130  Q
    ||||||||||||| | ||| || |  || ||||||||||||||||||||||| || ||||||||||| |||||||| | |||||||||||| |||||||     
T  493462 tttgttttcttgaggaccaagagatgagtgtttcaccaaggaacacacattgaccagccatggattttctgtcatcaatactagtggcccagtctgcatc 493363  T
Q  131 agagaacccggaaatatcaagatcagttgagggtttgatatgcagacatagatttgttgtgccatggagatatcttagtattctttttattccttgccag 230  Q
    ||| || || |  ||||| |  ||||| || || ||||| ||||| ||   |||  | ||||| ||||||||||| |  ||||||||||| ||||||||     
T  493362 agaaaaacctgttatatccaagtcagtggatggcttgatgtgcaggcaataattgatggtgccttggagatatctcaagattctttttataccttgccaa 493263  T
Q  231 tgatctgtggttggcaaactcatgtattgactgagtttgttgacagaaaaagctatgtcagg 292  Q
    || || ||||| ||  |||||||||||||||||||||| || |||||||| |||||||||||    
T  493262 tggtcagtggtaggtgaactcatgtattgactgagtttattaacagaaaaggctatgtcagg 493201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 31 - 292
Target Start/End: Original strand, 8320446 - 8320707
Alignment:
Q  31 tttgttttcttgatgcccacgaaaccagagtttcaccaaggaacacacattgtcctgccatggatttcctgtcatctacactagtggcccaatctgcatt 130  Q
    ||||||||||||| | ||| || |  || ||||||||||||||||||||||| || ||||||||||| |||||||| | |||||||||||| |||||||     
T  8320446 tttgttttcttgaggaccaagagatgagtgtttcaccaaggaacacacattgaccagccatggattttctgtcatcaatactagtggcccagtctgcatc 8320545  T
Q  131 agagaacccggaaatatcaagatcagttgagggtttgatatgcagacatagatttgttgtgccatggagatatcttagtattctttttattccttgccag 230  Q
    ||| || || |  ||||| |  ||||| || || ||||| ||||| ||   |||  | ||||| ||||||||||| |  ||||||||||| ||||||||     
T  8320546 agaaaaacctgttatatccaagtcagtggatggcttgatgtgcaggcaataattgatggtgccttggagatatctcaagattctttttataccttgccaa 8320645  T
Q  231 tgatctgtggttggcaaactcatgtattgactgagtttgttgacagaaaaagctatgtcagg 292  Q
    || || ||||| ||  |||||||||||||||||||||| || |||||||| |||||||||||    
T  8320646 tggtcagtggtaggtgaactcatgtattgactgagtttattaacagaaaaggctatgtcagg 8320707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 277
Target Start/End: Original strand, 29457769 - 29457986
Alignment:
Q  60 gtttcaccaaggaacacacattgtcctgccatggatttcctgtcatctacactagtggcccaatctgcattagagaacccggaaatatcaagatcagttg 159  Q
    ||||||||||| || ||||| |||||| |||||||||| |||||||||| ||| || |||||||| ||||  || || ||    || || |  || || |    
T  29457769 gtttcaccaagaaaaacacaatgtcctcccatggattttctgtcatctatacttgtagcccaatcagcatctgaaaatccatttatgtctaagtcggtgg 29457868  T
Q  160 agggtttgatatgcagac-atagatttgttgtgccatggagatatcttagtattctttttattccttgccagtgatctgtggttggcaaactcatgtatt 258  Q
    | || |||||||| |||| |||| ||||||||||| || |||||||| |  ||||| |||||||||||||| || || || || ||| | ||||| ||||    
T  29457869 aaggcttgatatgaagacaatag-tttgttgtgccttgtagatatctcataattctctttattccttgccaatgttcagtagtgggcgagctcatatatt 29457967  T
Q  259 gactgagtttgttgacaga 277  Q
    |||| |||||||| |||||    
T  29457968 gacttagtttgttcacaga 29457986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 31 - 292
Target Start/End: Original strand, 29736806 - 29737067
Alignment:
Q  31 tttgttttcttgatgcccacgaaaccagagtttcaccaaggaacacacattgtcctgccatggatttcctgtcatctacactagtggcccaatctgcatt 130  Q
    ||||||||||||| | ||| || |  || ||||||||||||||||||||||| || ||||||||||| |||||||| | |||||||||| | |||||||     
T  29736806 tttgttttcttgaggaccaagagatgagtgtttcaccaaggaacacacattgaccagccatggattttctgtcatcaatactagtggcctagtctgcatc 29736905  T
Q  131 agagaacccggaaatatcaagatcagttgagggtttgatatgcagacatagatttgttgtgccatggagatatcttagtattctttttattccttgccag 230  Q
    ||| || || |  ||||| |  ||||| || || ||||| ||||| ||   |||  | ||||| ||||||||||| |  ||||||||||| ||||||||     
T  29736906 agaaaaacctgttatatccaagtcagtggatggcttgatgtgcaggcaattattgatggtgccttggagatatctcaagattctttttataccttgccaa 29737005  T
Q  231 tgatctgtggttggcaaactcatgtattgactgagtttgttgacagaaaaagctatgtcagg 292  Q
    || || ||||| ||  |||||||||||||||||||||| || |||||||| |||||||||||    
T  29737006 tggtcagtggtaggtgaactcatgtattgactgagtttattaacagaaaaggctatgtcagg 29737067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 31 - 292
Target Start/End: Complemental strand, 22994520 - 22994259
Alignment:
Q  31 tttgttttcttgatgcccacgaaaccagagtttcaccaaggaacacacattgtcctgccatggatttcctgtcatctacactagtggcccaatctgcatt 130  Q
    ||||||||||||| | ||| || |  || ||||||||||||||||||||||| || ||||||||||| |||||||| | |||||||||||| |||||||     
T  22994520 tttgttttcttgaggaccaagagatgagtgtttcaccaaggaacacacattgaccagccatggattttctgtcatcaatactagtggcccagtctgcatc 22994421  T
Q  131 agagaacccggaaatatcaagatcagttgagggtttgatatgcagacatagatttgttgtgccatggagatatcttagtattctttttattccttgccag 230  Q
    ||| || ||    ||||| |  ||||| || || ||||| ||||  ||   |||  | ||||| ||||||||||| |  ||||||||||| ||||||||     
T  22994420 agaaaaacctattatatccaagtcagtggatggcttgatgtgcatgcaataattgatggtgccttggagatatctcaagattctttttataccttgccaa 22994321  T
Q  231 tgatctgtggttggcaaactcatgtattgactgagtttgttgacagaaaaagctatgtcagg 292  Q
    || || ||||| ||  |||||||||||||||||||||| || |||||||| |||||||||||    
T  22994320 tggtcagtggtaggtgaactcatgtattgactgagtttattaacagaaaaggctatgtcagg 22994259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 29218795 - 29218861
Alignment:
Q  63 tcaccaaggaacacacattgtcctgccatggatttcctgtcatctacactagtggcccaatctgcat 129  Q
    |||||||| || |||||||| |||||||||||||| || ||||| ||||||||||||||||||||||    
T  29218795 tcaccaagaaagacacattgacctgccatggattttctatcatcaacactagtggcccaatctgcat 29218861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 29332094 - 29332160
Alignment:
Q  63 tcaccaaggaacacacattgtcctgccatggatttcctgtcatctacactagtggcccaatctgcat 129  Q
    |||||||| || |||||||| |||||||||||||| || ||||| ||||||||||||||||||||||    
T  29332094 tcaccaagaaagacacattgacctgccatggattttctatcatcaacactagtggcccaatctgcat 29332160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University