View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11367_high_8 (Length: 352)
Name: NF11367_high_8
Description: NF11367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11367_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 339
Target Start/End: Complemental strand, 34972285 - 34971965
Alignment:
| Q |
19 |
ttacacatgttcacaaaacaaaggtatccacttggtaagatttaatttatatcttaaaatggctgagttaaaattatattgtcacacgacgatctcattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34972285 |
ttacacatgttcacaaaacaaaggtatccacttggtaagatttaatttatatcttaaaatggctgagttaaaattatattgtcacacgacgatctcattt |
34972186 |
T |
|
| Q |
119 |
gtgggtaatagataaatatctttatatgatctttgagtctctagattttctctaacactgatataaactctgaaaattcaactcacacaaacatataatt |
218 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34972185 |
gtgggtaatagataagtatctttatatgatctttgagtctctagattttctctaacactgatattaactctgaaaattcaactcacacaaacatataatt |
34972086 |
T |
|
| Q |
219 |
atccatagaaaaagatagtaaggtgttgttaaactttaaagttagataagatattaactaataattgttgttctcgcctgagatatttaagtcaaacctg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34972085 |
atccatagaaaaagatagtaaggtgttgttaaactttaaagttagatgagatatcaactaataattgttgttctcgcctgagatttttaagtcaaacctg |
34971986 |
T |
|
| Q |
319 |
gtagattgagccacaggttct |
339 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
34971985 |
gtagattgagcctcaggttct |
34971965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University