View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11367_low_10 (Length: 302)
Name: NF11367_low_10
Description: NF11367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11367_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 45037452 - 45037177
Alignment:
| Q |
17 |
cattacttaccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgtaaaccaa |
116 |
Q |
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| T |
45037452 |
cattacttaccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcagggtgacgccataacatagcaagaacaagattgtaaacaaa |
45037353 |
T |
|
| Q |
117 |
tgggattggcttataaatatccttgaaatacatattcaagaaatcttgttcagcaaaaggagtaggaggagtaactttaagtgtcttcaaaagatcgtgg |
216 |
Q |
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| T |
45037352 |
tgggattggcttataaatatccttgaaatacatattcaagaaatcttgttcagcaaaaggagtaggaggagtaactttaagtgtcttcaaaagatcgtgg |
45037253 |
T |
|
| Q |
217 |
taagtatcaatgcttggctcaaacaggaacatgccagcattgaagtaaagtgaaggaggttgacccatttcctttg |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45037252 |
taagtatcaatgcttggctcaaacaggaacatgccagcattgaagtaaagtgaaggaggttgacccatttcctttg |
45037177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 155
Target Start/End: Original strand, 45944023 - 45944147
Alignment:
| Q |
31 |
gcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgtaaaccaatgggattggcttat |
130 |
Q |
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| T |
45944023 |
gcacaatagtgaacaacttgaactttctcaagctcaacattctcaggatgacgccacatcatggccaacacaagattgtacacattaggtataggcttgt |
45944122 |
T |
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| Q |
131 |
aaatatccttgaaatacatattcaa |
155 |
Q |
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| T |
45944123 |
atttatccttgaaatacatgttcaa |
45944147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 20395365 - 20395224
Alignment:
| Q |
21 |
acttaccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgtaaaccaatggg |
120 |
Q |
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||||||||||||||| || |||||||| |||||||| | ||| |||||||| |||||||||||||| ||||| || || |||||||||||||| ||| |
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| T |
20395365 |
acttaccgctgcacagtaatgaacaactttgactttctcaagttcaacattctcaggatgacgccacaacatggccagcacaagattgtaaacattaggg |
20395266 |
T |
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| Q |
121 |
attggcttataaatatccttgaaatacatattcaagaaatct |
162 |
Q |
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| T |
20395265 |
ataggcttatatttatcattgaaatacatattcaaaaaatct |
20395224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 37686915 - 37687052
Alignment:
| Q |
24 |
taccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgtaaaccaatgggatt |
123 |
Q |
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|||||||||||| || |||||||| |||||||| | ||| |||||||| ||||| |||||||| ||||| || | |||||||| ||||| ||| ||| |
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| T |
37686915 |
taccgctgcacagtaatgaacaactttgactttctcaagttcaacattctcagggtgacgccacaacatggccaacacaagattataaacatttggaatt |
37687014 |
T |
|
| Q |
124 |
ggcttataaatatccttgaaatacatattcaagaaatc |
161 |
Q |
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| T |
37687015 |
ggcttatatttgtctttgaaatatatgttcaaaaaatc |
37687052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 37698603 - 37698466
Alignment:
| Q |
24 |
taccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgtaaaccaatgggatt |
123 |
Q |
| |
|
|||||||||||| || |||||||| |||||||| | ||| |||||||| ||||| |||||||| ||||| || | |||||||| ||||| ||| ||| |
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| T |
37698603 |
taccgctgcacagtaatgaacaactttgactttctcaagttcaacattctcagggtgacgccacaacatggccaacacaagattataaacatttggaatt |
37698504 |
T |
|
| Q |
124 |
ggcttataaatatccttgaaatacatattcaagaaatc |
161 |
Q |
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|||||||| | || |||||||| || ||||| ||||| |
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| T |
37698503 |
ggcttatatttgtctttgaaatatatgttcaaaaaatc |
37698466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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