View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11367_low_16 (Length: 250)
Name: NF11367_low_16
Description: NF11367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11367_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 24695212 - 24695453
Alignment:
| Q |
1 |
ccaaattgttgcaaacctaacacactgctatgataagacacaaccgagacaaataaaatctgagctgaattagatggtatgaattaagtcacttgtgcac |
100 |
Q |
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| T |
24695212 |
ccaaattgttgcaaacctaacacactgctatgataagacacaaccgagacaaataaaatctgagctgaattagatggtatgaattaagtcacctgtgcac |
24695311 |
T |
|
| Q |
101 |
tttaaaatcaccagaacaatctgaattttcaaaccgtaatatcgtcaaggaaaacccgcggattcaaacaccattgtacaatgttgtaattattgatctt |
200 |
Q |
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| T |
24695312 |
tttaaaatcaccagaacaatctgaattttcaaaccgtaatatcgtcaaggaaaacccgcggattcaaacaccactgcacaatgttgtaattattgatatt |
24695411 |
T |
|
| Q |
201 |
taatttaatacgcaaccagttccaagaataaactttcatctc |
242 |
Q |
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| T |
24695412 |
taatttaatacgcaaccagttccaagaataaactttcatctc |
24695453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 24707745 - 24707987
Alignment:
| Q |
1 |
ccaaattgttgcaaacctaacacactgctatgataa-gacacaaccgagacaaataaaatctgagctgaattagatggtatgaattaagtcacttgtgca |
99 |
Q |
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||||| || ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| || |||| |
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| T |
24707745 |
ccaaactgctgcaaacctaacacactgctacgataaagacacaaccgagacaaataaaatctgagttgaattagagggtatgaattaagtcaattatgca |
24707844 |
T |
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| Q |
100 |
ctttaaaatcaccagaacaatctgaattttcaaaccgtaatatcgtcaaggaaaacccgcggattcaaacaccattgtacaatgttgtaattattgatct |
199 |
Q |
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||| |||||||||||||| |||| |||||||||| ||||||| ||||||| || | |||| |||||||| | || ||||| ||||||| | || | |
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| T |
24707845 |
cttcaaaatcaccagaaccatctaaattttcaaaatgtaatattgtcaaggcaagcaaacggactcaaacacgactgcacaatattgtaatcgtgaatat |
24707944 |
T |
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| Q |
200 |
ttaatttaatacgcaaccagttccaagaataaactttcatctc |
242 |
Q |
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|| ||||||| | |||||||||||||||||||||||||||||| |
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| T |
24707945 |
ttgatttaatccacaaccagttccaagaataaactttcatctc |
24707987 |
T |
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