View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11367_low_18 (Length: 243)

Name: NF11367_low_18
Description: NF11367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11367_low_18
NF11367_low_18
[»] chr6 (32 HSPs)
chr6 (1-226)||(31000072-31000297)
chr6 (1-187)||(24890380-24890566)
chr6 (1-153)||(24730568-24730720)
chr6 (1-227)||(29882074-29882300)
chr6 (1-227)||(29909230-29909456)
chr6 (1-228)||(24272081-24272308)
chr6 (1-227)||(29928912-29929138)
chr6 (1-227)||(29348732-29348958)
chr6 (117-227)||(29889159-29889269)
chr6 (1-197)||(29886966-29887162)
chr6 (89-228)||(24263974-24264113)
chr6 (80-226)||(24886734-24886880)
chr6 (117-211)||(29897732-29897826)
chr6 (1-147)||(29876544-29876690)
chr6 (120-226)||(29902896-29903002)
chr6 (118-227)||(29358230-29358339)
chr6 (117-207)||(29834874-29834964)
chr6 (117-207)||(29866308-29866398)
chr6 (117-228)||(29098981-29099092)
chr6 (117-228)||(29115899-29116010)
chr6 (117-207)||(29073422-29073512)
chr6 (117-207)||(29084677-29084767)
chr6 (117-207)||(29105995-29106085)
chr6 (91-157)||(24884849-24884915)
chr6 (117-207)||(29366671-29366761)
chr6 (117-207)||(29894212-29894302)
chr6 (93-150)||(29905355-29905412)
chr6 (93-157)||(28926773-28926837)
chr6 (1-40)||(29946263-29946302)
chr6 (91-153)||(30154213-30154275)
chr6 (90-150)||(29950120-29950180)
chr6 (90-150)||(30149243-30149303)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-207)||(53730-53936)
[»] scaffold0237 (1 HSPs)
scaffold0237 (1-197)||(22012-22208)
[»] chr2 (2 HSPs)
chr2 (89-226)||(15063098-15063235)
chr2 (1-29)||(15063010-15063038)
[»] chr1 (2 HSPs)
chr1 (1-177)||(10129826-10130002)
chr1 (1-45)||(19490071-19490115)
[»] chr3 (3 HSPs)
chr3 (92-208)||(24219460-24219576)
chr3 (90-157)||(24226529-24226596)
chr3 (1-51)||(11991127-11991177)
[»] scaffold0573 (1 HSPs)
scaffold0573 (93-157)||(3846-3910)
[»] scaffold0051 (1 HSPs)
scaffold0051 (1-44)||(43419-43462)
[»] scaffold0014 (2 HSPs)
scaffold0014 (1-44)||(137196-137239)
scaffold0014 (1-38)||(140126-140163)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 31000072 - 31000297
Alignment:
Q  1 ttttaatcttacaaaatccattaatcatggtagtatagctctgaacattagccatgactcccctcgcggccatactatcgaatatttccttggccttgtt 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31000072 ttttaatcttgcaaaatccattaatcatggtagtatagctctgaacattagccatgactccccttgcggccatactatcgaatatttccttggccttgtt 31000171  T
Q  101 cacttcgttaatcaaacaatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacatttttatct 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||| ||    
T  31000172 cacttcgttaatcaaacaatatccatccattaaagagctataagtaacaacacgaggctttatgtcgtctttgatcatcatggctaatacatttttagct 31000271  T
Q  201 tctttcaccctaccatccttgcaaaa 226  Q
    |||||||||||||||||||| |||||    
T  31000272 tctttcaccctaccatccttacaaaa 31000297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 24890380 - 24890566
Alignment:
Q  1 ttttaatcttacaaaatccattaatcatggtagtatagctctgaacattagccatgactcccctcgcggccatactatcgaatatttccttggccttgtt 100  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||  | |||||||||||| ||||| ||||||||||||||    
T  24890380 ttttaatcttacaaaatccattaaccatggtagtatagatctgaacattagcaatgactccccctgaggccatactatcaaatatatccttggccttgtt 24890479  T
Q  101 cacttcgttaatcaaacaatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaa 187  Q
    ||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| || |||||    
T  24890480 cactttgtttatcgaacaatatccatccattaaagagttataagtaacaacatcaggttttatgtcgtctttcatcattatagctaa 24890566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 24730720 - 24730568
Alignment:
Q  1 ttttaatcttacaaaatccattaatcatggtagtatagctctgaacattagccatgactcccctcgcggccatactatcgaatatttccttggccttgtt 100  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| | |||||||||||||||||| || |||||||||||    
T  24730720 ttttaatcttacataatccattaatcatggtggtatagctctgaacattagcaatgactccccttgaggccatactatcgaatatatctttggccttgtt 24730621  T
Q  101 cacttcgttaatcaaacaatatccatccattaaagagttataagtaacaacat 153  Q
     | ||| ||||  || |||||||||||||||||||||||||||||||||||||    
T  24730620 aatttctttaactaagcaatatccatccattaaagagttataagtaacaacat 24730568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 29882300 - 29882074
Alignment:
Q  1 ttttaatcttacaaaatccattaatcatggtagtatagctctgaacattagccatgactcccctcgcggccatactatcgaatatttccttggccttgtt 100  Q
    ||||||||||||||||||||||||||||| || | |||||||||||||||||  | ||||||||    | |||| | | ||||||   || |||||||||    
T  29882300 ttttaatcttacaaaatccattaatcatgatactgtagctctgaacattagcagtcactcccctatgagacatagtgttgaatatactctcggccttgtt 29882201  T
Q  101 cacttcgttaatcaaacaatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacatttttatct 200  Q
    |||||| || | || |||||||||||||||||||||| | ||||||||||||| ||| || ||| | | |||||||||||| ||||| ||||||||| ||    
T  29882200 cacttcatttaccagacaatatccatccattaaagagctgtaagtaacaacatcaggtttaatgccttgtttcatcatcatagctaacacatttttagct 29882101  T
Q  201 tctttcaccctaccatccttgcaaaat 227  Q
    ||||||||||| || ||||| ||||||    
T  29882100 tctttcacccttccttccttacaaaat 29882074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 29909456 - 29909230
Alignment:
Q  1 ttttaatcttacaaaatccattaatcatggtagtatagctctgaacattagccatgactcccctcgcggccatactatcgaatatttccttggccttgtt 100  Q
    ||||||||||||||||||||||||||||| || | |||||||||||||||||  | ||||||||    | |||| | | ||||||   || |||||||||    
T  29909456 ttttaatcttacaaaatccattaatcatgatactgtagctctgaacattagcagtcactcccctatgagacatagtgttgaatatactctcggccttgtt 29909357  T
Q  101 cacttcgttaatcaaacaatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacatttttatct 200  Q
    |||||| || | || |||||||||||||||||||||| | ||||||||||||| ||| || ||| | | |||||||||||| ||||| ||||||||| ||    
T  29909356 cacttcatttaccagacaatatccatccattaaagagctgtaagtaacaacatcaggtttaatgccttgtttcatcatcatagctaacacatttttagct 29909257  T
Q  201 tctttcaccctaccatccttgcaaaat 227  Q
    ||||||||||| || ||||| ||||||    
T  29909256 tctttcacccttccttccttacaaaat 29909230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 24272081 - 24272308
Alignment:
Q  1 ttttaatcttacaaaatccattaatcatggtagtatagctctgaacattagccatgactcccctcgcggccatactatcgaatatttccttggccttgtt 100  Q
    |||||||||||||||||| |||||||||| || | |||||| ||||||||||  | ||||||||    | |||| | | ||||||   ||||||||||||    
T  24272081 ttttaatcttacaaaatctattaatcatgatactgtagctccgaacattagcggtcactcccctatgagacatagtgttgaatatactcttggccttgtt 24272180  T
Q  101 cacttcgttaatcaaacaatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacatttttatct 200  Q
    |||||| || | || |||||||| ||||||||||||||||||||||||||| | ||| || ||| | | |||||||||||| |||||  |||||||| ||    
T  24272181 cacttcatttaccagacaatatcgatccattaaagagttataagtaacaacgtcaggtttaatgccttgtttcatcatcatagctaacccatttttagct 24272280  T
Q  201 tctttcaccctaccatccttgcaaaatg 228  Q
    ||||||||||| || ||||| |||||||    
T  24272281 tctttcacccttccttccttacaaaatg 24272308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 29929138 - 29928912
Alignment:
Q  1 ttttaatcttacaaaatccattaatcatggtagtatagctctgaacattagccatgactcccctcgcggccatactatcgaatatttccttggccttgtt 100  Q
    ||||||||||||||||||||||||||||| || | ||||||| | |||||||  | ||||||||    | |||| | | ||||||   || |||||||||    
T  29929138 ttttaatcttacaaaatccattaatcatgatactgtagctcttagcattagcagtcactcccctatgagacatagtgttgaatatactctcggccttgtt 29929039  T
Q  101 cacttcgttaatcaaacaatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacatttttatct 200  Q
    |||||| || |  | |||||||||||||||||||||| | ||||||||||||| ||| || ||| | | |||||||||||| ||||| ||||||||| ||    
T  29929038 cacttcatttacaagacaatatccatccattaaagagctgtaagtaacaacatcaggtttaatgccttgtttcatcatcatagctaacacatttttagct 29928939  T
Q  201 tctttcaccctaccatccttgcaaaat 227  Q
    ||||||||||| || ||||| ||||||    
T  29928938 tctttcacccttccttccttacaaaat 29928912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 29348732 - 29348958
Alignment:
Q  1 ttttaatcttacaaaatccattaatcatggtagtatagctctgaacattagccatgactcccctcgcggccatactatcgaatatttccttggccttgtt 100  Q
    |||||||||||||||| || ||||||||| || | |||||||||||||||||  | ||||||| |   |||||| | | ||||||   ||| ||||| ||    
T  29348732 ttttaatcttacaaaacccgttaatcatgatattgtagctctgaacattagcagtcactcccccctgagccatagtgttgaatatactcttagccttatt 29348831  T
Q  101 cacttcgttaatcaaacaatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacatttttatct 200  Q
    |||||  ||||  |  |||||||||||||||||||||  |||||||||||||| ||| || ||| | | |||||||||||| ||||| ||||||||| ||    
T  29348832 cacttgtttaactaggcaatatccatccattaaagagcaataagtaacaacatcaggtttaatgccttgtttcatcatcatagctaacacatttttagct 29348931  T
Q  201 tctttcaccctaccatccttgcaaaat 227  Q
    ||||||||||| || ||||| ||||||    
T  29348932 tctttcacccttccttccttacaaaat 29348958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 29889269 - 29889159
Alignment:
Q  117 caatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacatttttatcttctttcaccctaccat 216  Q
    ||||||||||||||||||||||||||||||||||||||| | || |||||   |||||||||||| ||||| ||||||||| ||||||||||||| || |    
T  29889269 caatatccatccattaaagagttataagtaacaacattaagtttgatgtctcgtttcatcatcatagctaacacatttttagcttctttcacccttcctt 29889170  T
Q  217 ccttgcaaaat 227  Q
    |||| ||||||    
T  29889169 ccttacaaaat 29889159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 29887162 - 29886966
Alignment:
Q  1 ttttaatcttacaaaatccattaatcatggtagtatagctctgaacattagccatgactcccctcgcggccatactatcgaatatttccttggccttgtt 100  Q
    ||||||||||||||||||||||||||||| || | ||||||  |||||||||  | ||||||||    | |||| |   ||||||  ||||||| |||||    
T  29887162 ttttaatcttacaaaatccattaatcatgatattgtagctccaaacattagcagtcactcccctaagagacatagtgctgaatatacccttggcattgtt 29887063  T
Q  101 cacttcgttaatcaaacaatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacattttta 197  Q
    |||||| ||||  |  ||||||||||||||||||||| ||||||||||| ||||||| || ||| | | |||||||||||| ||||| |||||||||    
T  29887062 cacttcattaactaggcaatatccatccattaaagagctataagtaacagcattaggattgatgccttgtttcatcatcatagctaacacattttta 29886966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 228
Target Start/End: Original strand, 24263974 - 24264113
Alignment:
Q  89 cttggccttgttcacttcgttaatcaaacaatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaat 188  Q
    ||||||| |||||||||| || | || |||||||||||||||||||||||||||||||||||  | ||| || ||| | | |||||||||||| |||||     
T  24263974 cttggccatgttcacttcatttaccagacaatatccatccattaaagagttataagtaacaatgtcaggtttaatgccttgtttcatcatcatagctaac 24264073  T
Q  189 acatttttatcttctttcaccctaccatccttgcaaaatg 228  Q
     |||||||| ||||||||||||| || ||||| |||||||    
T  24264074 ccatttttagcttctttcacccttccttccttacaaaatg 24264113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 226
Target Start/End: Original strand, 24886734 - 24886880
Alignment:
Q  80 gaatatttccttggccttgttcacttcgttaatcaaacaatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatc 179  Q
    |||||| ||||||||| |||||| ||| ||||  || |||||||||| |||||||| ||||||||| |||||| |||| || ||| ||| ||||||||||    
T  24886734 gaatatatccttggccatgttcatttctttaactaagcaatatccattcattaaagtgttataagtgacaacactaggtttgatgccgtgtttcatcatc 24886833  T
Q  180 atggctaatacatttttatcttctttcaccctaccatccttgcaaaa 226  Q
    || | ||| |||| |||| |||||||||||||||| ||||| |||||    
T  24886834 atagataacacatatttagcttctttcaccctaccttccttacaaaa 24886880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 29897826 - 29897732
Alignment:
Q  117 caatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacatttttatcttctttcaccct 211  Q
    ||||||||||||||||||||||||||||||| ||||||||| || ||||| | |||||||||||| || || ||||||||| |||||||||||||    
T  29897826 caatatccatccattaaagagttataagtaaaaacattaggtttaatgtcttgtttcatcatcatagcaaacacatttttagcttctttcaccct 29897732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 29876690 - 29876544
Alignment:
Q  1 ttttaatcttacaaaatccattaatcatggtagtatagctctgaacattagccatgactcccctcgcggccatactatcgaatatttccttggccttgtt 100  Q
    |||||| |||||||||||||||||||||| || | |||||| ||||||| ||  | |||||||||    ||||| | | |||||| | ||| |||||||     
T  29876690 ttttaaccttacaaaatccattaatcatgatactgtagctccgaacatttgcagtcactcccctctgaaccatagtgttgaatatattcttagccttgtc 29876591  T
Q  101 cacttcgttaatcaaacaatatccatccattaaagagttataagtaa 147  Q
    |||||| |||| || ||||||||||||||||||||||||||||||||    
T  29876590 cacttctttaaccagacaatatccatccattaaagagttataagtaa 29876544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 226
Target Start/End: Complemental strand, 29903002 - 29902896
Alignment:
Q  120 tatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacatttttatcttctttcaccctaccatcct 219  Q
    |||||||||||||||||||||||||||||||| | ||| || ||| | | |||||||||||| ||||| ||||||||| ||||||||||||| || ||||    
T  29903002 tatccatccattaaagagttataagtaacaacgtcaggtttgatgccttgtttcatcatcatagctaacacatttttagcttctttcacccttccttcct 29902903  T
Q  220 tgcaaaa 226  Q
    | |||||    
T  29902902 tacaaaa 29902896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 29358230 - 29358339
Alignment:
Q  118 aatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacatttttatcttctttcaccctaccatc 217  Q
    ||||||||||||||||||||||||||||||||||   ||| || ||| | | | |||||||||| ||||| ||||||||| ||||||||||||| || ||    
T  29358230 aatatccatccattaaagagttataagtaacaacgccaggtttaatgccttgtatcatcatcatagctaacacatttttagcttctttcacccttccttc 29358329  T
Q  218 cttgcaaaat 227  Q
    ||| ||||||    
T  29358330 cttacaaaat 29358339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 29834964 - 29834874
Alignment:
Q  117 caatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacatttttatcttctttca 207  Q
    ||||||||||||||||||| | |||||||||||||||| || || ||| | | |||||||||||| ||||| ||||||||| |||||||||    
T  29834964 caatatccatccattaaagcgctataagtaacaacattgggtttcatgccttgtttcatcatcatagctaacacatttttagcttctttca 29834874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 29866398 - 29866308
Alignment:
Q  117 caatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacatttttatcttctttca 207  Q
    ||||||||||||||||||| | |||||||||||||||| || || ||| | | |||||||||||| ||||| ||||||||| |||||||||    
T  29866398 caatatccatccattaaagcgctataagtaacaacattgggtttcatgccttgtttcatcatcatagctaacacatttttagcttctttca 29866308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 228
Target Start/End: Complemental strand, 29099092 - 29098981
Alignment:
Q  117 caatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacatttttatcttctttcaccctaccat 216  Q
    |||||||||||||||||||||||||||||||||| |||||| || ||| | | ||||||||||||  | || ||| ||||| ||||||||| | | || |    
T  29099092 caatatccatccattaaagagttataagtaacaaaattaggtttgatgccttgtttcatcatcatatcaaacacagttttaccttctttcatctttccgt 29098993  T
Q  217 ccttgcaaaatg 228  Q
    |||| |||||||    
T  29098992 ccttacaaaatg 29098981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 228
Target Start/End: Complemental strand, 29116010 - 29115899
Alignment:
Q  117 caatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacatttttatcttctttcaccctaccat 216  Q
    |||||||||||||||||||||||||||||||||| |||||| || ||| | | ||||||||||||  | || ||| ||||| ||||||||| | | || |    
T  29116010 caatatccatccattaaagagttataagtaacaaaattaggtttgatgccttgtttcatcatcatatcaaacacagttttaccttctttcatctttccgt 29115911  T
Q  217 ccttgcaaaatg 228  Q
    |||| |||||||    
T  29115910 ccttacaaaatg 29115899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 29073512 - 29073422
Alignment:
Q  117 caatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacatttttatcttctttca 207  Q
    |||||||||||||||||||||  |||||||||||||||||| || ||| | | |||||||||||| || || ||| ||||| |||||||||    
T  29073512 caatatccatccattaaagagcaataagtaacaacattaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttca 29073422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 29084767 - 29084677
Alignment:
Q  117 caatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacatttttatcttctttca 207  Q
    ||||||||||||||||||||||||||||||||||||| |||  | ||| | | |||||||||||| || || ||| ||||| |||||||||    
T  29084767 caatatccatccattaaagagttataagtaacaacatcaggtatgatgccttgtttcatcatcatagcaaacacagttttaccttctttca 29084677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 29106085 - 29105995
Alignment:
Q  117 caatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacatttttatcttctttca 207  Q
    |||||||||||||||||||||  |||||||||||||||||| || ||| | | |||||||||||| || || ||| ||||| |||||||||    
T  29106085 caatatccatccattaaagagcaataagtaacaacattaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttca 29105995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 24884915 - 24884849
Alignment:
Q  91 tggccttgttcacttcgttaatcaaacaatatccatccattaaagagttataagtaacaacattagg 157  Q
    |||||||||||||||| |||| |||  |||| ||||||||||||||  |||||||||||||||||||    
T  24884915 tggccttgttcacttctttaaccaagaaataaccatccattaaagaagtataagtaacaacattagg 24884849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 29366671 - 29366761
Alignment:
Q  117 caatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacatttttatcttctttca 207  Q
    ||||||| ||||||||||||||||||||||| ||| | ||| || ||| | | |||||||||||| ||||  ||||||||| |||||||||    
T  29366671 caatatctatccattaaagagttataagtaaaaacgtcaggtttaatgccttgtttcatcatcatagctagcacatttttagcttctttca 29366761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 29894302 - 29894212
Alignment:
Q  117 caatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacatttttatcttctttca 207  Q
    |||||||||||||||||||||  ||| |||||||||||||| || ||| | | |||||||||||| || || ||| ||||| |||||||||    
T  29894302 caatatccatccattaaagagcaataggtaacaacattaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttca 29894212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 29905412 - 29905355
Alignment:
Q  93 gccttgttcacttcgttaatcaaacaatatccatccattaaagagttataagtaacaa 150  Q
    ||||| |||||||| ||||  || ||||||||||||||||||||||||||||||||||    
T  29905412 gccttattcacttctttaagtaagcaatatccatccattaaagagttataagtaacaa 29905355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 28926773 - 28926837
Alignment:
Q  93 gccttgttcacttcgttaatcaaacaatatccatccattaaagagttataagtaacaacattagg 157  Q
    |||||||||||||| ||||  |  ||||||||||||||||||||| ||||||||||||| |||||    
T  28926773 gccttgttcacttctttaacaaggcaatatccatccattaaagagctataagtaacaacgttagg 28926837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29946302 - 29946263
Alignment:
Q  1 ttttaatcttacaaaatccattaatcatggtagtatagct 40  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  29946302 ttttaatcttacaaaatccattaatcatgataatatagct 29946263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 30154275 - 30154213
Alignment:
Q  91 tggccttgttcacttcgttaatcaaacaatatccatccattaaagagttataagtaacaacat 153  Q
    ||||||| |||||||| |||| |||  |||| |||||||| ||||| ||||||||||||||||    
T  30154275 tggccttattcacttctttaaccaagaaatacccatccatcaaagaattataagtaacaacat 30154213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 29950120 - 29950180
Alignment:
Q  90 ttggccttgttcacttcgttaatcaaacaatatccatccattaaagagttataagtaacaa 150  Q
    ||||||||||| ||||| |||| |||  |||| ||||||||||||||  ||||||||||||    
T  29950120 ttggccttgttgacttctttaaccaagaaataaccatccattaaagaactataagtaacaa 29950180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 30149303 - 30149243
Alignment:
Q  90 ttggccttgttcacttcgttaatcaaacaatatccatccattaaagagttataagtaacaa 150  Q
    ||||||||||| ||||| |||| |||  |||| ||||||||||||||  ||||||||||||    
T  30149303 ttggccttgttgacttctttaaccaagaaataaccatccattaaagaactataagtaacaa 30149243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 53730 - 53936
Alignment:
Q  1 ttttaatcttacaaaatccattaatcatggtagtatagctctgaacattagccatgactcccctcgcggccatactatcgaatatttccttggccttgtt 100  Q
    ||||||||||||||||||||||||||||| || | ||||| |||||||||||  | |||||||||   | |||| | | |||||| | ||| ||||| ||    
T  53730 ttttaatcttacaaaatccattaatcatgatattgtagctatgaacattagcagtcactcccctctgagacatagtgttgaatatcttcttagccttatt 53829  T
Q  101 cacttcgttaatcaaacaatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacatttttatct 200  Q
    |||||  ||||  |  |||||||||||||||||||||  |||||||||||||||||| || ||| | | |||||||||||| || || ||| ||||| ||    
T  53830 cacttgtttaactaggcaatatccatccattaaagagcaataagtaacaacattaggtttaatgccttgtttcatcatcatagcaaacacagttttacct 53929  T
Q  201 tctttca 207  Q
    |||||||    
T  53930 tctttca 53936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 22208 - 22012
Alignment:
Q  1 ttttaatcttacaaaatccattaatcatggtagtatagctctgaacattagccatgactcccctcgcggccatactatcgaatatttccttggccttgtt 100  Q
    ||||||||||||||||||||||||||||| || | |||||||||||||||||  | || |||||    | |||| | | ||||||   || |||||||||    
T  22208 ttttaatcttacaaaatccattaatcatgatattgtagctctgaacattagcagtcacacccctatgagacatagtgttgaatatactctcggccttgtt 22109  T
Q  101 cacttcgttaatcaaacaatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaatacattttta 197  Q
    |||||| || | || |||||||||||||||||||||| | ||||||||||||| ||| || |||   | |||||||||||| ||||| |||||||||    
T  22108 cacttcatttaccagacaatatccatccattaaagagctgtaagtaacaacatcaggtttaatgctttgtttcatcatcatagctaacacattttta 22012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 89 - 226
Target Start/End: Original strand, 15063098 - 15063235
Alignment:
Q  89 cttggccttgttcacttcgttaatcaaacaatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaat 188  Q
    |||||||||||||||||  ||||  || ||||||||||||||||||||||||||||||||||||| | | |||| ||  | |||||||||||  |||||     
T  15063098 cttggccttgttcacttgtttaactaagcaatatccatccattaaagagttataagtaacaacatcaagttttacgttttttttcatcatcacagctaac 15063197  T
Q  189 acatttttatcttctttcaccctaccatccttgcaaaa 226  Q
    ||||||||| ||||| ||||| | || ||||| |||||    
T  15063198 acatttttagcttctctcacctttccttccttacaaaa 15063235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 15063010 - 15063038
Alignment:
Q  1 ttttaatcttacaaaatccattaatcatg 29  Q
    |||||||||||||||||||||||||||||    
T  15063010 ttttaatcttacaaaatccattaatcatg 15063038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 10130002 - 10129826
Alignment:
Q  1 ttttaatcttacaaaatccattaatcatggtagtatagctctgaacattagccatgactcccctcgcggccatactatcgaatatttccttggccttgtt 100  Q
    ||||||||||||||||||||||||||||| || | || || |||||||  || || ||||||||   ||||||  | | || |||  |||  ||||||||    
T  10130002 ttttaatcttacaaaatccattaatcatgatactgtaactttgaacatcggcaatcactcccctttgggccatggtgttgagtataacctcagccttgtt 10129903  T
Q  101 cacttcgttaatcaaacaatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatca 177  Q
    |||||  ||||  | |||||||||||| |||||||| |||||||||||||| ||||| |||| | ||| ||||||||    
T  10129902 cacttgtttaacaagacaatatccatctattaaagaattataagtaacaacgttaggttttacgccgtttttcatca 10129826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19490115 - 19490071
Alignment:
Q  1 ttttaatcttacaaaatccattaatcatggtagtatagctctgaa 45  Q
    |||| |||||||| ||||||||||||||| |||||||||||||||    
T  19490115 ttttcatcttacataatccattaatcatgatagtatagctctgaa 19490071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 24219460 - 24219576
Alignment:
Q  92 ggccttgttcacttcgttaatcaaacaatatccatccattaaagagttataagtaacaacattaggctttatgtcgtctttcatcatcatggctaataca 191  Q
    |||||||||||| || || | || ||||||||||| |||||||||||||||||||||||  ||||| ||||  || | |||||||||||   | || |||    
T  24219460 ggccttgttcacctcatttaccagacaatatccattcattaaagagttataagtaacaatgttaggttttacatcttttttcatcatcacaacaaacaca 24219559  T
Q  192 tttttatcttctttcac 208  Q
    |||||| ||||||||||    
T  24219560 tttttagcttctttcac 24219576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 24226596 - 24226529
Alignment:
Q  90 ttggccttgttcacttcgttaatcaaacaatatccatccattaaagagttataagtaacaacattagg 157  Q
    ||||||||||| ||||| |||| |||  |||| |||||||| ||||| ||||||||||||| ||||||    
T  24226596 ttggccttgttgacttctttaaccaagaaatacccatccatcaaagaattataagtaacaatattagg 24226529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 11991177 - 11991127
Alignment:
Q  1 ttttaatcttacaaaatccattaatcatggtagtatagctctgaacattag 51  Q
    |||||||||||||||||||||||||||| |||  |||||| ||| ||||||    
T  11991177 ttttaatcttacaaaatccattaatcatagtacaatagctatgagcattag 11991127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 3910 - 3846
Alignment:
Q  93 gccttgttcacttcgttaatcaaacaatatccatccattaaagagttataagtaacaacattagg 157  Q
    |||||||||||||| ||||  |  ||||||||||||||||||||| ||||||||||||| |||||    
T  3910 gccttgttcacttctttaacaaggcaatatccatccattaaagagctataagtaacaacgttagg 3846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 43419 - 43462
Alignment:
Q  1 ttttaatcttacaaaatccattaatcatggtagtatagctctga 44  Q
    ||||||||||||||||||||||||||||| || |||||||||||    
T  43419 ttttaatcttacaaaatccattaatcatgatattatagctctga 43462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 137239 - 137196
Alignment:
Q  1 ttttaatcttacaaaatccattaatcatggtagtatagctctga 44  Q
    ||||||||||||| ||||||||||||||| || |||||||||||    
T  137239 ttttaatcttacagaatccattaatcatgatattatagctctga 137196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 140163 - 140126
Alignment:
Q  1 ttttaatcttacaaaatccattaatcatggtagtatag 38  Q
    ||||||||||||||||||||||||||||| || |||||    
T  140163 ttttaatcttacaaaatccattaatcatgatactatag 140126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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