View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11367_low_2 (Length: 563)
Name: NF11367_low_2
Description: NF11367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11367_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 551
Target Start/End: Complemental strand, 3727560 - 3727038
Alignment:
| Q |
18 |
aatagtaccacatttgatggaagattttaacaattgtttataacaattttcaccttacaaattagttttgtagaattgaattagcctcaactcaaattat |
117 |
Q |
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| T |
3727560 |
aatagtaccacatttgatgaaagattttaacaattgtttataacaattttcaccttacaaattagttttgtagaattgaattagcctcaactcaaattat |
3727461 |
T |
|
| Q |
118 |
tataagataacatcaaagtctatctaagatctgttagaccacttgatacaagttaccgctatgtcattcacgacacatttcgagagttatgttaagagtt |
217 |
Q |
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||||||||||||| |||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3727460 |
tataagataacattaaagtctatctaagatttgatagaccacttgatacaagttaacgctatgtcattcacgacacatttcgagagttatgttaagagtt |
3727361 |
T |
|
| Q |
218 |
ccatattgaatgagatacgtgttttaagagtctcacattagatgagacaacatttaaacaattgtttataaatatgagtgtaatcctcaccttacaaaca |
317 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3727360 |
tcatattgaatgagatacgtgttttaaaagtctcacattagatgagacaacatttaaacaattgtttataa--atgagtgtaatcctcaccttacaaaca |
3727263 |
T |
|
| Q |
318 |
aattttgtgaagttgattcagatccaacccaaattataagacaaacattgttctcaattgcataccaacaattcagccagactctgtatagtacataaca |
417 |
Q |
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| T |
3727262 |
aattttgtgaagttgattcagatccaacccaaattataagacaaacattgttctcaattgcataccaacaattcagcca----------agtacataaca |
3727173 |
T |
|
| Q |
418 |
attaactacataataattttactttattccttaaattggagtacaaatctacagaatcaggaagggtgattcagaaaagaaaggatcatgtccaaaaggt |
517 |
Q |
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| T |
3727172 |
attaactacataataattttactttattccttaaattggagtacaaatctacagaatcaggaagggttattcagaaaagaaaggatcatgtccaaaaggt |
3727073 |
T |
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| Q |
518 |
cat-aaaatacaatacatgtcaaaatatctgtgct |
551 |
Q |
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| T |
3727072 |
cataaaaatgcaatacatgtcaaaatatctgtgct |
3727038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 28948179 - 28948141
Alignment:
| Q |
116 |
attataagataacatcaaagtctatctaagatctgttag |
154 |
Q |
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|||| ||||||||||||||||||||||||||||| |||| |
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| T |
28948179 |
attaaaagataacatcaaagtctatctaagatctattag |
28948141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 5972278 - 5972327
Alignment:
| Q |
241 |
ttaagagtctcacattagatgagacaacatttaaacaattgtttataaat |
290 |
Q |
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|||||||||||||||||||||||| | || ||||||| ||||||||||| |
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| T |
5972278 |
ttaagagtctcacattagatgagagataatctaaacaagtgtttataaat |
5972327 |
T |
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