View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11367_low_20 (Length: 240)
Name: NF11367_low_20
Description: NF11367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11367_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 8718636 - 8718857
Alignment:
| Q |
2 |
gacatgaaataaataatgtgtgtaaaaaagaaaatacacaaatatttgactaaataccaagagaataaatgtataataataatgataccaataatcctct |
101 |
Q |
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| T |
8718636 |
gacatgaaataaataatgtgtgtaaaaaagaaaatacacaaatatttgactaaataccaagagaataaatgtataataataatgataccaataatcctct |
8718735 |
T |
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| Q |
102 |
atttttcactccaaataaattagaactatcatgttctgacgataaaaacagcagcagctatgtcatggaaaaatgaatcagcttgattgaagcaacattc |
201 |
Q |
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| T |
8718736 |
atttttcactccaaataaattagaactatcatgttctgacgataaaaacagcagcagctatgtcatggaaaaatgaatcagcttgattgaagcaacattc |
8718835 |
T |
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| Q |
202 |
agcctagtgatgagcatctaat |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
8718836 |
agcctagtgatgagcatctaat |
8718857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 8672323 - 8672547
Alignment:
| Q |
1 |
tgacatgaaataaataatgtgtgtaaaaaagaaaatacacaaatatttgactaaataccaagagaataaatgtataataataatgataccaataatcctc |
100 |
Q |
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| T |
8672323 |
tgacatgaaataaataatgtgtgtaaaaaagaaaatacacaaatatttgactaaataccaagagaataaatgtataataataatgataccaataatcctc |
8672422 |
T |
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| Q |
101 |
tatttttcactccaaataaattagaactatcatgttctgacg--ataaaaacagcagcagctatgtcatggaaaaatgaatcagcttgattgaagcaaca |
198 |
Q |
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| T |
8672423 |
tatttttcactccaaataaattagaactatcatgttctgacgatataaaaacagcagcagctatgtcatggaaaaatgaatcagcttgattgaagcaaca |
8672522 |
T |
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| Q |
199 |
ttcagcctagtgatgagcatctaat |
223 |
Q |
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|| || ||| |||||||||| |||| |
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| T |
8672523 |
tttagtctaatgatgagcatttaat |
8672547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 8590843 - 8590909
Alignment:
| Q |
36 |
tacacaaatatttgactaaataccaagagaataaatgtataataataatgataccaataatcctctattt |
105 |
Q |
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|||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
8590843 |
tacagaaatatttgacttaataacaagagaataaatgt---ctaataatgataccaataaccctctattt |
8590909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 8590925 - 8590958
Alignment:
| Q |
103 |
tttttcactccaaataaattagaactatcatgtt |
136 |
Q |
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| T |
8590925 |
tttttcactccaaataaattagaactatcatgtt |
8590958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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