View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11367_low_4 (Length: 406)
Name: NF11367_low_4
Description: NF11367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11367_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 34646347 - 34646729
Alignment:
| Q |
19 |
caaggggtttgcattctttcatgcctgctcaagttcaaggttgtggatttcctttgcaagattttaagcaagtaccaatgaatttctgtttagatgggat |
118 |
Q |
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| T |
34646347 |
caaggggtttgcattctttcatgcctgctcaagttcaaggttgtggatttcctttgcaagattttaagcaagtaccaatgaatttctgtttagatgggat |
34646446 |
T |
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| Q |
119 |
tggtggaagtggttatgcaagtcttgatcatggtgttcaagagacaattagtgaagggagggttttgtttccttttgaggatttgaaacatgtttccagt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34646447 |
tggtggaagtggttatgcaagtcttgatcatggtgttcaagagacaattagtgaagggagggttttgtttccttttgaggatttgaaacatgtttctagt |
34646546 |
T |
|
| Q |
219 |
acaaataacccaacaatattggatttggatcagaataataataaggaggatcaacaaggatattcaacagggatttggactggaatgttgggaggagaag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34646547 |
acaaataacccaacaatattggatttggatcagaataataataaggaggatcaacaaggatattcaacagggatttggactggaatgttgggaggagaag |
34646646 |
T |
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| Q |
319 |
gaggaggatcatggtaattaacttgggagaagtcatggatatatttaatacaagtattactactcatttgatttcttctctct |
401 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34646647 |
gaggaggatcatggtaattaacttgggagaagtcatgaatatatttaatacaagtattactactcatttgatttcttctctct |
34646729 |
T |
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