View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11367_low_6 (Length: 387)
Name: NF11367_low_6
Description: NF11367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11367_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 374
Target Start/End: Original strand, 1261856 - 1262210
Alignment:
| Q |
20 |
cataggagtaacacttgtggaggtaagtcttgtccaaatgctttgtgatgaagttagagaataaattttcttaatgagtctcaaaagttaataaatgcag |
119 |
Q |
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| T |
1261856 |
cataggagtaacacttgtggaggtaagtcttgtccaaatgctttgtgatgaagttagagaataaattttcttaattagtctcaaaaattaataaatgcag |
1261955 |
T |
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| Q |
120 |
ggagaacttgagcataatcaaattgtggcagttattaaacaagtagacattgtgatatgtacttttgcttatcctcaagtgatggagcaactcaaaatta |
219 |
Q |
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| T |
1261956 |
ggagaacttgagcataatcaaattgtggcagttattaaacaagcagacattgtgatatgtacttttgcttatcctcaagtgatggagcaactcaaaatta |
1262055 |
T |
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| Q |
220 |
ttgaagctgtcaaagttgctggtaatattaaggtaatgaatatttccaaattcatatatatctataaggaaagtgtttctcctaaaaatagatgaaatta |
319 |
Q |
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| T |
1262056 |
ttgaagctgtcaaagttgctggtaatattaaggtaatgaatatttccaaattcatatatatttataaggaaagtgtttctcctaaaaatagatgaaatta |
1262155 |
T |
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| Q |
320 |
ccccccttctcttttgattttcttttcaatcattgatcgataattattacttcct |
374 |
Q |
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| T |
1262156 |
ccccccttctcttttgattttcttttcaatcactgattgataattattacttcct |
1262210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 115 - 253
Target Start/End: Complemental strand, 1338598 - 1338460
Alignment:
| Q |
115 |
tgcagggagaacttgagcataatcaaattgtggcagttattaaacaagtagacattgtgatatgtacttttgcttatcctcaagtgatggagcaactcaa |
214 |
Q |
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| T |
1338598 |
tgcagggagaacttgagcatgaccagattgtgaaagtgattaagcaagtagacattgtgatatgtacctttccatacccacaagtgttggagcaactcaa |
1338499 |
T |
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| Q |
215 |
aattattgaagctgtcaaagttgctggtaatattaaggt |
253 |
Q |
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| T |
1338498 |
aattatagatgctattaaagttgctggcaatatcaaggt |
1338460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 115 - 254
Target Start/End: Complemental strand, 1323859 - 1323720
Alignment:
| Q |
115 |
tgcagggagaacttgagcataatcaaattgtggcagttattaaacaagtagacattgtgatatgtacttttgcttatcctcaagtgatggagcaactcaa |
214 |
Q |
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| T |
1323859 |
tgcagggagaacttgaacatgaccagattgttagagtcataaaagaagcagacattgtgatatgtacctttccatatccgcaagtgatggagcaactcaa |
1323760 |
T |
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| Q |
215 |
aattattgaagctgtcaaagttgctggtaatattaaggta |
254 |
Q |
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| T |
1323759 |
aattgtagatgctatcaaagttgctggtaatatcaaggta |
1323720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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