View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11367_low_7 (Length: 381)

Name: NF11367_low_7
Description: NF11367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11367_low_7
NF11367_low_7
[»] chr6 (2 HSPs)
chr6 (20-378)||(20602844-20603202)
chr6 (76-344)||(34763428-34763696)
[»] chr8 (4 HSPs)
chr8 (75-334)||(2308638-2308897)
chr8 (75-334)||(2313832-2314091)
chr8 (81-341)||(25818367-25818630)
chr8 (247-341)||(25892785-25892879)
[»] chr1 (3 HSPs)
chr1 (76-344)||(29457361-29457629)
chr1 (217-329)||(8320208-8320320)
chr1 (277-334)||(24645876-24645933)
[»] chr2 (5 HSPs)
chr2 (76-329)||(29218383-29218637)
chr2 (76-329)||(29331682-29331936)
chr2 (247-329)||(22994646-22994728)
chr2 (20-63)||(18144407-18144450)
chr2 (53-85)||(18144470-18144502)
[»] scaffold1235 (1 HSPs)
scaffold1235 (217-329)||(2070-2182)
[»] chr5 (1 HSPs)
chr5 (217-329)||(29736568-29736680)
[»] chr4 (1 HSPs)
chr4 (217-329)||(28402581-28402693)
[»] chr3 (1 HSPs)
chr3 (217-329)||(493588-493700)


Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 378
Target Start/End: Complemental strand, 20603202 - 20602844
Alignment:
Q  20 acacatgtgttgactattgctaggcacataaggtcataattattagaatcacaactttctctaactccccctctcaaactgatggtgacgtagtcacccc 119  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||    
T  20603202 acacatgtgttgactaatgctaggcacatcaggtcataattattagaatcacaactttctctaactccccctcttaaactaatggtgacatagtcacccc 20603103  T
Q  120 aagtttgtctctaaaaatgttgaaccttgtatgcgtgagaggtttggttaaacaatctgcaatttgatctgctgtgggcacattggatatagtgatttta 219  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| | |||||| |||| ||||||||||||||||    
T  20603102 aagtttgtgactaaaaatgttgaaccttgtatgcgtgagaggtttggttaaagaatctacaatttgatcagttgtgggaacataggatatagtgatttta 20603003  T
Q  220 ttttgaagtacttgatcacgtacgtagtgaacatctatttctatatgcttggaccgagcatgcataactggattcgatgctagtgccttggcactcaggt 319  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  20603002 ttttgaagtacttgatcacgtatgtagtcaacatctatttctatatgcctggaccgagcatgcataactaggttcgatgctagtgccttggcactcaggt 20602903  T
Q  320 tatcacaccacaaaattggtttcctaatcatagggagtttcaactctcctagaagtgat 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20602902 tatcacaccacaaaattggtttcctaatcatagggagtttcaactctcttagaagtgat 20602844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 76 - 344
Target Start/End: Original strand, 34763428 - 34763696
Alignment:
Q  76 ttctctaactccccctctcaaactgatggtgacgtagtcaccccaagtttgtctctaaaaatgttgaaccttgtatgcgtgagaggtttggttaaacaat 175  Q
    |||||||| || ||| |||||||||||||||| | |||||| ||||||||||| || |  | |||||| ||||  || ||||| | ||| ||||  || |    
T  34763428 ttctctaattctccccctcaaactgatggtgatggagtcactccaagtttgtcccttaggaagttgaatcttgagtgagtgagtgatttagttaggcagt 34763527  T
Q  176 ctgcaatttgatctgctgtgggcacattggatatagtgattttattttgaagtacttgatcacgtacgtagtgaacatctatttctatatgcttggaccg 275  Q
    ||||||| || ||||| || || |||| ||  |  ||||||| |  ||  ||||||||||| | || | |||||||||||||||| || || |||||||     
T  34763528 ctgcaatctggtctgcagttggtacataggccactgtgatttgacctttcagtacttgatctcttatgaagtgaacatctatttcaatgtgtttggacct 34763627  T
Q  276 agcatgcataactggattcgatgctagtgccttggcactcaggttatcacaccacaaaattggtttcct 344  Q
    |||||||||||  ||||| ||||| |||||||| ||||||| ||||||||||||||| ||||| |||||    
T  34763628 agcatgcataataggatttgatgcaagtgccttagcactcaagttatcacaccacaatattggcttcct 34763696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 75 - 334
Target Start/End: Complemental strand, 2308897 - 2308638
Alignment:
Q  75 tttctctaactccccctctcaaactgatggtgacgtagtcaccccaagtttgtctctaaaaatgttgaaccttgtatgcgtgagaggtttggttaaacaa 174  Q
    ||||| ||||||||| ||||||||||||||||||   || || ||||||||||| || || ||||||||||| || || ||||||| ||||||||  ||     
T  2308897 tttctttaactccccttctcaaactgatggtgactctgttactccaagtttgtccctcaagatgttgaacctagtgtgagtgagagctttggttaggcag 2308798  T
Q  175 tctgcaatttgatctgctgtgggcacattggatatagtgattttattttgaagtacttgatcacgtacgtagtgaacatctatttctatatgcttggacc 274  Q
    ||||||||||||||||| |  || ||||  |  |  | || || ||||||||| || |||||||||| ||||||||| ||||| || || || || ||||    
T  2308797 tctgcaatttgatctgcagaaggaacataagcaactgcgacttcattttgaaggacctgatcacgtatgtagtgaacgtctatctcaatgtgtttagacc 2308698  T
Q  275 gagcatgcataactggattcgatgctagtgccttggcactcaggttatcacaccacaaaa 334  Q
      ||||||||||| ||||| || ||||||||||| ||||||| |||||||||||||||||    
T  2308697 tggcatgcataaccggattggaagctagtgccttagcactcaagttatcacaccacaaaa 2308638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 75 - 334
Target Start/End: Complemental strand, 2314091 - 2313832
Alignment:
Q  75 tttctctaactccccctctcaaactgatggtgacgtagtcaccccaagtttgtctctaaaaatgttgaaccttgtatgcgtgagaggtttggttaaacaa 174  Q
    ||||| ||||||||| ||||||||||||||||||   || || ||||||||||| || || ||||||||||| || || ||||||| ||||||||  ||     
T  2314091 tttctttaactccccttctcaaactgatggtgactctgttactccaagtttgtccctcaagatgttgaacctagtgtgagtgagagctttggttaggcag 2313992  T
Q  175 tctgcaatttgatctgctgtgggcacattggatatagtgattttattttgaagtacttgatcacgtacgtagtgaacatctatttctatatgcttggacc 274  Q
    ||||||||||||||||| |  || ||||  |  |  | || || ||||||||| || |||||||||| ||||||||| ||||| || || || || ||||    
T  2313991 tctgcaatttgatctgcagaaggaacataagcaactgcgacttcattttgaaggacctgatcacgtatgtagtgaacgtctatctcaatgtgtttagacc 2313892  T
Q  275 gagcatgcataactggattcgatgctagtgccttggcactcaggttatcacaccacaaaa 334  Q
      ||||||||||| ||||| || ||||||||||| ||||||| |||||||||||||||||    
T  2313891 tggcatgcataaccggattggaagctagtgccttagcactcaagttatcacaccacaaaa 2313832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 81 - 341
Target Start/End: Complemental strand, 25818630 - 25818367
Alignment:
Q  81 taactccccctctcaaactgatggtgacgtagtcaccccaagtttgtctctaaaaatgttgaaccttgtatgcgtgagaggtttggttaaacaatctgca 180  Q
    |||||| ||| ||||||||| |||||| | |||||| |||||||||||||| ||||  ||||| |||| ||| ||||| | ||| || || ||||||||     
T  25818630 taactctccccctcaaactggtggtgagggagtcactccaagtttgtctcttaaaaaattgaatcttgaatgagtgagggatttagtcaagcaatctgcg 25818531  T
Q  181 atttgatctgctgtgggcacattggatatagtgattttattttgaagtacttgatcacgtacgtagtgaacatctatttctatatgc---ttggaccgag 277  Q
    ||||| || ||||| || ||||  | ||| |||||||||| ||| || |||||||| | ||| || || ||||| ||||| || ||    ||||| ||||    
T  25818530 atttggtcagctgtaggaacataagctattgtgattttatcttgtagcacttgatctcttacataatgcacatcaatttcaatgtgtaatttggaacgag 25818431  T
Q  278 catgcataactggattcgatgctagtgccttggcactcaggttatcacaccacaaaattggttt 341  Q
    |||||||||| ||||| ||||| |||||||| ||||| | ||||||||||||||||||||||||    
T  25818430 catgcataaccggattggatgcaagtgccttagcacttaagttatcacaccacaaaattggttt 25818367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 247 - 341
Target Start/End: Original strand, 25892785 - 25892879
Alignment:
Q  247 tgaacatctatttctatatgcttggaccgagcatgcataactggattcgatgctagtgccttggcactcaggttatcacaccacaaaattggttt 341  Q
    |||||||| ||||| || || ||| | |||||||||||||| ||||| ||||| |||||||| ||||| | ||||||||||||||  ||||||||    
T  25892785 tgaacatcaatttcaatgtgtttgaaacgagcatgcataaccggattggatgcaagtgccttagcacttaagttatcacaccacatgattggttt 25892879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 76 - 344
Target Start/End: Original strand, 29457361 - 29457629
Alignment:
Q  76 ttctctaactccccctctcaaactgatggtgacgtagtcaccccaagtttgtctctaaaaatgttgaaccttgtatgcgtgagaggtttggttaaacaat 175  Q
    |||||||| || ||| |||||||||||||||| | |||||| ||||||||||| || |  | |||||| ||||  || ||||| | ||| ||||  || |    
T  29457361 ttctctaattctccccctcaaactgatggtgatggagtcactccaagtttgtcccttaggaagttgaatcttgagtgagtgagtgatttagttaggcagt 29457460  T
Q  176 ctgcaatttgatctgctgtgggcacattggatatagtgattttattttgaagtacttgatcacgtacgtagtgaacatctatttctatatgcttggaccg 275  Q
    ||||||| || ||||| || || |||| ||  |  ||||||| |  ||  ||||||||||| | || | |||||||||||||||| || || |||||||     
T  29457461 ctgcaatctggtctgcagttggtacataggccactgtgatttgacctttcagtacttgatctcttatgaagtgaacatctatttcaatgtgtttggacct 29457560  T
Q  276 agcatgcataactggattcgatgctagtgccttggcactcaggttatcacaccacaaaattggtttcct 344  Q
    |||||||||||  ||||| ||||| |||||||| ||||||| ||||||||||||||| ||||| |||||    
T  29457561 agcatgcataataggatttgatgcaagtgccttagcactcaagttatcacaccacaatattggcttcct 29457629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 217 - 329
Target Start/End: Original strand, 8320208 - 8320320
Alignment:
Q  217 ttattttgaagtacttgatcacgtacgtagtgaacatctatttctatatgcttggaccgagcatgcataactggattcgatgctagtgccttggcactca 316  Q
    |||||||| |||||||| || |  | ||| |||||||| ||||| |||||||| || ||||||||||  |||||||| || |||||||||||||||||||    
T  8320208 ttattttgtagtacttggtctctgatgtaatgaacatcaatttcaatatgcttagaacgagcatgcaatactggattagaagctagtgccttggcactca 8320307  T
Q  317 ggttatcacacca 329  Q
     ||||||||||||    
T  8320308 agttatcacacca 8320320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 334
Target Start/End: Original strand, 24645876 - 24645933
Alignment:
Q  277 gcatgcataactggattcgatgctagtgccttggcactcaggttatcacaccacaaaa 334  Q
    ||||||||||| ||||| || ||||||||||| ||||||| |||||||||||||||||    
T  24645876 gcatgcataaccggattggaagctagtgccttagcactcaagttatcacaccacaaaa 24645933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 76 - 329
Target Start/End: Original strand, 29218383 - 29218637
Alignment:
Q  76 ttctctaactccccctctcaaactgatgg-tgacgtagtcaccccaagtttgtctctaaaaatgttgaaccttgtatgcgtgagaggtttggttaaacaa 174  Q
    ||||||||||||||||||||||||||||| ||| | ||||| |||||||||||||||||    |||||| |  ||||| || |  |  || || | |||     
T  29218383 ttctctaactccccctctcaaactgatgggtgaaggagtcaacccaagtttgtctctaagttggttgaaacgagtatgagtcaaggccttagtgagacag 29218482  T
Q  175 tctgcaatttgatctgctgtgggcacattggatatagtgattttattttgaagtacttgatcacgtacgtagtgaacatctatttctatatgcttggacc 274  Q
    |  | ||||||||| ||||  || ||||  | || | |||| |||| ||| ||||||||||| |  | |||||| ||||| ||||| |||||||| || |    
T  29218483 ttagtaatttgatcagctgatgggacatatgctacaatgatcttatcttgtagtacttgatctctgatgtagtgcacatcaatttcaatatgctttgatc 29218582  T
Q  275 gagcatgcataactggattcgatgctagtgccttggcactcaggttatcacacca 329  Q
    |||||||||| |||||||| || ||||||||||||||||| | ||||||||||||    
T  29218583 gagcatgcatgactggatttgaagctagtgccttggcacttaagttatcacacca 29218637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 76 - 329
Target Start/End: Original strand, 29331682 - 29331936
Alignment:
Q  76 ttctctaactccccctctcaaactgatgg-tgacgtagtcaccccaagtttgtctctaaaaatgttgaaccttgtatgcgtgagaggtttggttaaacaa 174  Q
    ||||||||||||||||||||||||||||| ||| | ||||| |||||||||||||||||    |||||| |  ||||| || |  |  || || | |||     
T  29331682 ttctctaactccccctctcaaactgatgggtgaaggagtcaacccaagtttgtctctaagttggttgaaacgagtatgagtcaaggccttagtgagacag 29331781  T
Q  175 tctgcaatttgatctgctgtgggcacattggatatagtgattttattttgaagtacttgatcacgtacgtagtgaacatctatttctatatgcttggacc 274  Q
    |  | ||||||||| ||||  || ||||  | || | |||| |||| ||| ||||||||||| |  | |||||| ||||| ||||| |||||||| || |    
T  29331782 ttagtaatttgatcagctgatgggacatatgctacaatgatcttatcttgtagtacttgatctctgatgtagtgcacatcaatttcaatatgctttgatc 29331881  T
Q  275 gagcatgcataactggattcgatgctagtgccttggcactcaggttatcacacca 329  Q
    |||||||||| |||||||| || ||||||||||||||||| | ||||||||||||    
T  29331882 gagcatgcatgactggatttgaagctagtgccttggcacttaagttatcacacca 29331936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 329
Target Start/End: Complemental strand, 22994728 - 22994646
Alignment:
Q  247 tgaacatctatttctatatgcttggaccgagcatgcataactggattcgatgctagtgccttggcactcaggttatcacacca 329  Q
    |||||||| ||||| |||||||| || ||||||||||  |||||||| || ||||||||||||||||||| ||||||||||||    
T  22994728 tgaacatcaatttcaatatgcttagaacgagcatgcaatactggattagaagctagtgccttggcactcaagttatcacacca 22994646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 18144407 - 18144450
Alignment:
Q  20 acacatgtgttgactattgctaggcacataaggtcataattatt 63  Q
    |||||||| ||||||||||||||||||||||| |||||||||||    
T  18144407 acacatgtattgactattgctaggcacataagttcataattatt 18144450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 18144470 - 18144502
Alignment:
Q  53 tcataattattagaatcacaactttctctaact 85  Q
    |||||||||||||||||||||||||||||||||    
T  18144470 tcataattattagaatcacaactttctctaact 18144502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1235 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold1235
Description:

Target: scaffold1235; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 217 - 329
Target Start/End: Complemental strand, 2182 - 2070
Alignment:
Q  217 ttattttgaagtacttgatcacgtacgtagtgaacatctatttctatatgcttggaccgagcatgcataactggattcgatgctagtgccttggcactca 316  Q
    |||||||| |||||||| || |  | ||| |||||||| ||||| |||||||| || ||||||||||  |||||||| || |||||||||||||||||||    
T  2182 ttattttgtagtacttggtctctgatgtaatgaacatcaatttcaatatgcttagaacgagcatgcaatactggattagaagctagtgccttggcactca 2083  T
Q  317 ggttatcacacca 329  Q
     ||||||||||||    
T  2082 agttatcacacca 2070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 217 - 329
Target Start/End: Original strand, 29736568 - 29736680
Alignment:
Q  217 ttattttgaagtacttgatcacgtacgtagtgaacatctatttctatatgcttggaccgagcatgcataactggattcgatgctagtgccttggcactca 316  Q
    |||||||| |||||||| || |  | ||| |||||||| ||||| |||||||| || ||||||||||  |||||||| || |||||||||||||||||||    
T  29736568 ttattttgtagtacttggtctctgatgtaatgaacatcaatttcaatatgcttagaacgagcatgcaatactggattagaagctagtgccttggcactca 29736667  T
Q  317 ggttatcacacca 329  Q
     ||||||||||||    
T  29736668 agttatcacacca 29736680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 217 - 329
Target Start/End: Complemental strand, 28402693 - 28402581
Alignment:
Q  217 ttattttgaagtacttgatcacgtacgtagtgaacatctatttctatatgcttggaccgagcatgcataactggattcgatgctagtgccttggcactca 316  Q
    |||||||| |||||||| || |  | ||| |||||||| ||||| |||||||| || ||||||||||  |||||||| || |||||||||||||||||||    
T  28402693 ttattttgtagtacttggtctctgatgtaatgaacatcaatttcaatatgcttagaacgagcatgcaatactggattagaagctagtgccttggcactca 28402594  T
Q  317 ggttatcacacca 329  Q
     ||||||||||||    
T  28402593 agttatcacacca 28402581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 217 - 329
Target Start/End: Complemental strand, 493700 - 493588
Alignment:
Q  217 ttattttgaagtacttgatcacgtacgtagtgaacatctatttctatatgcttggaccgagcatgcataactggattcgatgctagtgccttggcactca 316  Q
    |||||||| |||||||| || |  | ||| |||||||| ||||| |||||||| || ||||||||||  |||||||| || |||||||||||||||||||    
T  493700 ttattttgtagtacttggtctctgatgtaatgaacatcaatttcaatatgcttagaacgagcatgcaatactggattagaagctagtgccttggcactca 493601  T
Q  317 ggttatcacacca 329  Q
     ||||||||||||    
T  493600 agttatcacacca 493588  T

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