View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11368_high_1 (Length: 787)

Name: NF11368_high_1
Description: NF11368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11368_high_1
NF11368_high_1
[»] chr8 (5 HSPs)
chr8 (425-775)||(6888361-6888707)
chr8 (36-314)||(6888896-6889180)
chr8 (380-424)||(6888786-6888830)
chr8 (717-775)||(28292267-28292325)
chr8 (706-775)||(10866875-10866944)
[»] chr3 (1 HSPs)
chr3 (708-775)||(8402709-8402776)
[»] chr7 (5 HSPs)
chr7 (428-494)||(45378324-45378390)
chr7 (700-775)||(16536732-16536807)
chr7 (700-775)||(16577430-16577505)
chr7 (700-775)||(16588157-16588232)
chr7 (700-775)||(16628855-16628930)
[»] chr1 (1 HSPs)
chr1 (700-775)||(15299028-15299103)
[»] scaffold1026 (1 HSPs)
scaffold1026 (700-772)||(1993-2065)
[»] chr5 (2 HSPs)
chr5 (432-497)||(5550641-5550706)
chr5 (708-757)||(22644041-22644089)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-151; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 425 - 775
Target Start/End: Complemental strand, 6888707 - 6888361
Alignment:
Q  425 aaggacgaaatattcacaagaatctgagtttaatttctagatgaaacaatttttgatcaagctttatttacctgttgaactccggattatccggg-ccat 523  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||| | ||| ||||    
T  6888707 aaggacgaaatattcacaagaatctaagtttaatttctaaatgaaataatttttgatcaagctttatttacctgttgaattccggattaccaggggccat 6888608  T
Q  524 tttccttggtaactggaggttaacacacaaaaaacatgttattattgtttacacccaatacatgttataacattattactagtcaattaaatatagggca 623  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6888607 tttccttggtaacaggaggttaacacacaaaaaacatgttattattgtttacacccaatacatgttataacattattactagtcaattaaatatagggca 6888508  T
Q  624 aggtaaattcccctcaaatgattgatgattatgtgggtggaaacacaaccggatgtgagttatttggatgtttaaattctttctattttgttgcttgaag 723  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| ||||     ||||||||||    
T  6888507 aggtaaattcccctcaaatgattgatgattatgtgagtggaaacacaaccggatgtgagttatttgaatgtctaaattctatcta-----ttgcttgaag 6888413  T
Q  724 aaaagcaacgatttaagtttggatttgtgatgatggaacataatatgatatt 775  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  6888412 aaaagcaaagatttaagtttggatttgtgatgatggaatataatatgatatt 6888361  T

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Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 36 - 314
Target Start/End: Complemental strand, 6889180 - 6888896
Alignment:
Q  36 aaaaggatcatatgaaaaggggggaaggcattctaaggatgcagggtgtgtgtctgnnnnnnn-----aaatcgaggtagagaaaattttattaataacg 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||            ||||| ||||||||||||||||||||||||||    
T  6889180 aaaaggatcatatgaaaaggggggaaggcattctaaggatgcagggtgtgtgtgtgtgtgttttttttaaatcaaggtagagaaaattttattaataacg 6889081  T
Q  131 tttaaactaatagtcattt-acaattgcgtttggagaaatttaaatcatgtcccttaagatacaatttcatgttgttactattgaacttacactctatgg 229  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6889080 tttaaactaatagtcattttacaattgcgtttggagaaatttaaatcatgtcccttaagatacaatttcatgttgttactattgaacttacactctatgg 6888981  T
Q  230 acacacatactttgctaaaatgtttgctataacataaaaaattgtcatcattatcctatagataattcaacaaaataaaaatgtc 314  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6888980 acacaaatactttgctaaaatgtttgctataacataaaaaattgtcatcattatcctatagataattcaacaaaataaaaatgtc 6888896  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 380 - 424
Target Start/End: Complemental strand, 6888830 - 6888786
Alignment:
Q  380 agtcaacgcggagttaaatttatataaaattattttacacattat 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6888830 agtcaacgcggagttaaatttatataaaattattttacacattat 6888786  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 717 - 775
Target Start/End: Complemental strand, 28292325 - 28292267
Alignment:
Q  717 cttgaagaaaagcaacgatttaagtttggatttgtgatgatggaacataatatgatatt 775  Q
    ||||| || |||||||||| ||||||| | ||||||||||||||||  |||||||||||    
T  28292325 cttgaggataagcaacgatataagtttaggtttgtgatgatggaacgcaatatgatatt 28292267  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 706 - 775
Target Start/End: Original strand, 10866875 - 10866944
Alignment:
Q  706 ctattttgttgcttgaagaaaagcaacgatttaagtttggatttgtgatgatggaacataatatgatatt 775  Q
    ||||||||| |||||| || || ||| | ||||| |||||  ||||||||||||||||| ||||||||||    
T  10866875 ctattttgtagcttgaggacaaacaaaggtttaattttggggttgtgatgatggaacatcatatgatatt 10866944  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 708 - 775
Target Start/End: Complemental strand, 8402776 - 8402709
Alignment:
Q  708 attttgttgcttgaagaaaagcaacgatttaagtttggatttgtgatgatggaacataatatgatatt 775  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||  || ||| ||||||||||    
T  8402776 attttgttgcttgaggaaaagcaacgatttaagtttggggttgtgatgacagagcatcatatgatatt 8402709  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 428 - 494
Target Start/End: Complemental strand, 45378390 - 45378324
Alignment:
Q  428 gacgaaatattcacaagaatctgagtttaatttctagatgaaacaatttttgatcaagctttattta 494  Q
    |||||| |||||| || ||| ||||||||||| ||||||||||||||| |||||||| |||||||||    
T  45378390 gacgaattattcaaaataatttgagtttaattcctagatgaaacaattattgatcaaactttattta 45378324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 775
Target Start/End: Complemental strand, 16536807 - 16536732
Alignment:
Q  700 ttctttctattttgttgcttgaagaaaagcaacgatttaagtttggatttgtgatgatggaacataatatgatatt 775  Q
    |||||| ||||||||||||||| || || |||| ||||||||||    ||||||||||||||||| || |||||||    
T  16536807 ttctttttattttgttgcttgaggacaaacaacaatttaagtttaaggttgtgatgatggaacatcatctgatatt 16536732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 775
Target Start/End: Complemental strand, 16577505 - 16577430
Alignment:
Q  700 ttctttctattttgttgcttgaagaaaagcaacgatttaagtttggatttgtgatgatggaacataatatgatatt 775  Q
    |||||| |||||| |||||||| || || |||| ||||||||||    ||||||||||||||||| ||||||||||    
T  16577505 ttctttttatttttttgcttgaggacaaacaacaatttaagtttaaggttgtgatgatggaacatcatatgatatt 16577430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 775
Target Start/End: Original strand, 16588157 - 16588232
Alignment:
Q  700 ttctttctattttgttgcttgaagaaaagcaacgatttaagtttggatttgtgatgatggaacataatatgatatt 775  Q
    |||||| |||||| |||||||| || || |||| ||||||||||    ||||||||||||||||| ||||||||||    
T  16588157 ttctttttatttttttgcttgaggacaaacaacaatttaagtttaaggttgtgatgatggaacatcatatgatatt 16588232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 775
Target Start/End: Original strand, 16628855 - 16628930
Alignment:
Q  700 ttctttctattttgttgcttgaagaaaagcaacgatttaagtttggatttgtgatgatggaacataatatgatatt 775  Q
    |||||| ||||||||||||||| || || |||| ||||||||||    ||||||||||||||||| || |||||||    
T  16628855 ttctttttattttgttgcttgaggacaaacaacaatttaagtttaaggttgtgatgatggaacatcatctgatatt 16628930  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 700 - 775
Target Start/End: Complemental strand, 15299103 - 15299028
Alignment:
Q  700 ttctttctattttgttgcttgaagaaaagcaacgatttaagtttggatttgtgatgatggaacataatatgatatt 775  Q
    ||||| ||||||| |||||||| || || ||||||||||| ||||   ||||||||||||||||| ||||||||||    
T  15299103 ttcttgctatttttttgcttgaggagaatcaacgatttaaatttgcgattgtgatgatggaacatcatatgatatt 15299028  T

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Target: scaffold1026 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 700 - 772
Target Start/End: Complemental strand, 2065 - 1993
Alignment:
Q  700 ttctttctattttgttgcttgaagaaaagcaacgatttaagtttggatttgtgatgatggaacataatatgat 772  Q
    ||||| ||||||| |||||||| || ||| |||| |||||||||||  ||| |||||||||| ||||||||||    
T  2065 ttcttgctatttttttgcttgatgacaagtaacgttttaagtttggggttgcgatgatggaatataatatgat 1993  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 432 - 497
Target Start/End: Complemental strand, 5550706 - 5550641
Alignment:
Q  432 aaatattcacaagaatctgagtttaatttctagatgaaacaatttttgatcaagctttatttacct 497  Q
    ||||||||| |||| |||||||||||||||| ||| ||| ||||||| ||||  ||||| ||||||    
T  5550706 aaatattcaaaagactctgagtttaatttcttgataaaataattttttatcagactttacttacct 5550641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 757
Target Start/End: Complemental strand, 22644089 - 22644041
Alignment:
Q  708 attttgttgcttgaagaaaagcaacgatttaagtttggatttgtgatgat 757  Q
    |||||||||||||| || |||||||| ||||||||||| |||||||||||    
T  22644089 attttgttgcttgaggataagcaacggtttaagtttgg-tttgtgatgat 22644041  T

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