View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11368_high_10 (Length: 343)
Name: NF11368_high_10
Description: NF11368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11368_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 331
Target Start/End: Original strand, 47052063 - 47052379
Alignment:
| Q |
15 |
aaggcaaggtcaaatttataaggatcgcgaggagtggtgcgatgtttataaggagtacctagaaagagtagatccattcttccaactcccctttcaatgg |
114 |
Q |
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| T |
47052063 |
aaggcaaggtcaaatttataaggatcgcgacgagtggtgcaatgtttataaggagtacctagaaagagtagatccattcttccaactcccctttcaatgg |
47052162 |
T |
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| Q |
115 |
caaaacttacccattgatcaataatgtcgctatgttcacaatctaaatagaagttgacgaggaaagaatcgataattgtgccctgaaagttcttgataaa |
214 |
Q |
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| T |
47052163 |
caaaacttacccattgatcaataatgtcgctatgttcacaatctaaatagaagttgacgaggaaagaatcgataattgtgccctgaaagttcttgataaa |
47052262 |
T |
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| Q |
215 |
ctgatcaactctctctacaaaaacacccgcactcttatacaaattgacttgtttatcctccgtatcagaagcattaacgagatagccggattgtagcaga |
314 |
Q |
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| T |
47052263 |
ctgatcaactctctctacaaaaacacccgcacacttatccaaattgacttgtttatcctccgtatcagaagcattaacgagatagccggattgtagcaga |
47052362 |
T |
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| Q |
315 |
tcgtgttcagtggttcc |
331 |
Q |
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| T |
47052363 |
tcgtgttcagtggttcc |
47052379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 48108346 - 48108486
Alignment:
| Q |
77 |
aaagagtagatccattcttccaactcccctttcaatggcaaaacttacccattgatcaataatgtcgctatgttcacaatctaaatagaagttgacgagg |
176 |
Q |
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| T |
48108346 |
aaagagtagatccacttttacaactccccttgcaattgcaaaacttatccattgatcaataatgttgttgtgtttactatttatatagaagttcacaagg |
48108445 |
T |
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| Q |
177 |
aaagaatcgataattgtgccctgaaagttcttgataaactg |
217 |
Q |
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| T |
48108446 |
aaagaatcgatctttgttccttgaaattttttgacaaactg |
48108486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 225
Target Start/End: Complemental strand, 47927065 - 47926915
Alignment:
| Q |
75 |
agaaagagtagatccattcttccaactcccctttcaatggcaaaacttacccattgatcaataatgtcgctatgttcacaatctaaatagaagttgacga |
174 |
Q |
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| T |
47927065 |
agaaagagtaaatcgatcattccaactccctttgcaattgcaaaacttatccattgatcaattgtgttgctttgttcacaatttaaatagaagctcacta |
47926966 |
T |
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| Q |
175 |
ggaaagaatcgataattgtgccctgaaagttcttgataaactgatcaactc |
225 |
Q |
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| T |
47926965 |
ggaaagaattgatcactgtgccaggaaaattcttgacaaattgatctactc |
47926915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 39411371 - 39411263
Alignment:
| Q |
75 |
agaaagagtagatccattcttccaactcccctttcaatggcaaaacttacccattgatcaataatgtcgctatgttcacaatctaaatagaagttgacga |
174 |
Q |
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| T |
39411371 |
agaaagagtaaatcgattcttccaactcccattgcaattgcaaaacttatccattgatcaatagtgttgctttgttcacaatttaaatagaagttcacta |
39411272 |
T |
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| Q |
175 |
ggaaagaat |
183 |
Q |
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| T |
39411271 |
ggaaagaat |
39411263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 72 - 215
Target Start/End: Complemental strand, 50458843 - 50458700
Alignment:
| Q |
72 |
cctagaaagagtagatccattcttccaactcccctttcaatggcaaaacttacccattgatcaataatgtcgctatgttcacaatctaaatagaagttga |
171 |
Q |
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|||||||| ||||||| |||||| ||||||| ||| |||| |||||||||| ||||||||||||| ||| || ||||||||||||||||| || || | |
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| T |
50458843 |
cctagaaaaagtagattgattctttcaactcctcttgcaatcgcaaaacttatccattgatcaatattgttactttgttcacaatctaaataaaaattca |
50458744 |
T |
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| Q |
172 |
cgaggaaagaatcgataattgtgccctgaaagttcttgataaac |
215 |
Q |
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| | ||||||||| ||| ||||||| | ||| ||||||| |||| |
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| T |
50458743 |
ctacgaaagaatcaatatttgtgccttcaaaattcttgacaaac |
50458700 |
T |
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