View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11369_high_13 (Length: 327)
Name: NF11369_high_13
Description: NF11369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11369_high_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 10824899 - 10825174
Alignment:
| Q |
19 |
agcacagaggcaaccattttgtcagaactcgtactgaatcctcgtctcgtcaagagtggccgaaccaatgacttcatcttcatcctgaacaaattcaaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10824899 |
agcacagaggcaaccattttgtcagaactcgtactgaatcctcgtctcgtcaagagtggccgaaccaatgacttcatcttcatcctgaacaaattcaaaa |
10824998 |
T |
|
| Q |
119 |
acatcacaaacacatacaagatttaaacaatgtttgttaattactgtgattttgttcctattttcacgattttctcatgaggtttgttcagtgataagaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10824999 |
acatcacaaacacatacaagatttaaacaatgtttgttaattactgtgattttgttcctattttcacgattttctcatgaggtttgttcagtgataagaa |
10825098 |
T |
|
| Q |
219 |
aatataggtttcatacctggaagaggaagagtgtgtctcgccgaaaatgtgcagaaaatgttgagcgactagagtga |
295 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10825099 |
aatataggtttcatacct-gaagaggaagagtgtgtgtcgccgaaaatgtgcagaaaatgttgagcgactagagtga |
10825174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 36142977 - 36142810
Alignment:
| Q |
19 |
agcacagaggcaaccattttgtcagaactcgtactgaatcctcgtctcgtcaagagtggccgaaccaatgacttcatcttcatcctgaacaaattcaaaa |
118 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
36142977 |
agcacagaggcaaccattttctcagagctcgtactgaatcctcgcctcatcaagagtggccgaaccaatgacatcatcttcatcctgaacgaattcaaaa |
36142878 |
T |
|
| Q |
119 |
acat------cacaaacacatacaagatttaaacaatgtttgttaattactgtgattttgttcctatt |
180 |
Q |
| |
|
|||| |||||||||| | | |||| ||||| ||||| |||||| | ||||||||||||||||| |
|
|
| T |
36142877 |
acatcacacacacaaacacaaagaggattcaaacattgtttattaatttccgtgattttgttcctatt |
36142810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University