View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11369_high_2 (Length: 618)
Name: NF11369_high_2
Description: NF11369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11369_high_2 |
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| [»] scaffold0620 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 17 - 601
Target Start/End: Original strand, 6840734 - 6841318
Alignment:
| Q |
17 |
ataaacttctactcccgaagcataaagcatcggcttcccaacgacaacgtcatgttgaagtctaacaactttgaaattatttatatccttaaaggcacaa |
116 |
Q |
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||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6840734 |
ataaaattctgctcccgaagcataaagcatcggcttccctacgacaacgtcatgttgaagtctaacaactttgaaattatttatatccttaaaggcacaa |
6840833 |
T |
|
| Q |
117 |
aaaccatacaaggaatcatcatatttagagtcagagaatgagggtgcaggaggg-atacggtgaacttgtttaactgttgggttccatagaatcaagtga |
215 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6840834 |
aaaccatacaaggaatcatcatatttaga-tcagagaatgagggtgcaggaggggatacggtgaacttgtttaactgttgggttccatagaatcaagtga |
6840932 |
T |
|
| Q |
216 |
ccaagatttgttgaatgccaataaaaagcttttaaaaagaaaacaccgttgcaattgccatatgattcaatcttgagtatggttttattgttagcaggaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6840933 |
ccaagatttgttgaatgccaataaaaagcttttaaaaagaaaacaccattgcaattgccatatgattcaatcttgagtatggttttattgttagcaggaa |
6841032 |
T |
|
| Q |
316 |
agagggagtagaagcgtatgcgttccacctcctcatggctggcgccgtgacaggagagaagagcgatatagggaggtctgaattcaatgggtctgggaat |
415 |
Q |
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||||||||||||||| ||||| ||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6841033 |
agagggagtagaagcagatgcgctccacctcctcatggtcgaggtcgtcacaggagagaagagcgatatagggaggtctgaattcaatgggtctgggaat |
6841132 |
T |
|
| Q |
416 |
gatcatgagactatgacctttacggttttcagaattgtgcagtttccacctattcacaaaatatggagttttgaaaagaatgttccaagatttttcaaca |
515 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6841133 |
gatcatgagactatggcctttacggttttcagaattgtgcagtttccacctattcacaaaatatggagttttgaaaagaatgttccaagatttttcaaca |
6841232 |
T |
|
| Q |
516 |
gatttgaaacgcatcaatgattttactggtagatgaagtagtatctctatctgtaaatctgaggttaaactcgaccagttcattct |
601 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6841233 |
gatttgaaacgcatcaatgattttaccggtagatgaaatagtatctctatctgtaaatctgagtttaaactcgaccagttcattct |
6841318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 69 - 587
Target Start/End: Complemental strand, 1178100 - 1177585
Alignment:
| Q |
69 |
tgttgaagtctaacaactttgaaattatttata------tccttaaaggcacaaaaaccatacaaggaatcatcatatttagagtcagagaatgagggtg |
162 |
Q |
| |
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||||||||||||||||||||||||||| | || || ||||| ||||| |||||||||| |||||||||||| ||||||| | |||||||||||| |
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| T |
1178100 |
tgttgaagtctaacaactttgaaattaatgctacagtcgtcgttaaatgcacagaaaccatacagggaatcatcatacttagagtgacagaatgagggtg |
1178001 |
T |
|
| Q |
163 |
caggagggatacggtgaacttgtttaactgttgggttccatagaatcaagtgaccaagatttgttgaatgccaataaaaagcttttaaaaagaaaacacc |
262 |
Q |
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|||| || ||| |||| || |||||| ||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||| ||||||||||| |
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| T |
1178000 |
cagggggtataaggtggacctgtttagttgttgggttccatagaatcaagtgaccaaga---gttgaattcctataaaaagcttttaagaagaaaacacc |
1177904 |
T |
|
| Q |
263 |
gttgcaattgccatatgattcaatcttgagtatggttttattgttagcaggaaagagggagtagaagcgtatgcgttccacctcctcatggctggcgccg |
362 |
Q |
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|||||||||||||||| |||||| | || | || | | | |||||||||||||| ||||| || |||||| |||||| | | || |
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| T |
1177903 |
attgcaattgccatatgtttcaattcggtctacgaattga---tcaccaggaaagagggagcagaagtagatatgttccaactcctc------gccacca |
1177813 |
T |
|
| Q |
363 |
tgacaggagagaagagcgatatagggaggtctgaat---tcaatgggtctgggaatgatcatgagactatgacctttacggttttcagaattgtgcagtt |
459 |
Q |
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| ||||||||||||| ||| ||||||||| ||||| |||||||||||| || ||||||||||||||| |||||| || || ||||||||| | |
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| T |
1177812 |
tcgcaggagagaagagtgatgtagggaggtttgaatccatcaatgggtctgtgatagatcatgagactatggcctttatcgtatttagaattgtgacgcc |
1177713 |
T |
|
| Q |
460 |
tccacctattcacaaaatatggagttttgaaaagaatgttccaagatttttcaacagatttgaaacgcatcaatgattttactggtagatgaagtagtat |
559 |
Q |
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||||||||||||||||| | ||| |||||| ||||||||||| |||||||||||| ||||||| |||||||| ||||| ||||| |||||||||||||| |
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| T |
1177712 |
tccacctattcacaaaagagggacttttgatcagaatgttccatgatttttcaacacatttgaatcgcatcaacgatttcactggcagatgaagtagtat |
1177613 |
T |
|
| Q |
560 |
ctctatctgtaaatctgaggttaaactc |
587 |
Q |
| |
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| T |
1177612 |
ctctatctccaaatctgagcctaaactc |
1177585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 473 - 575
Target Start/End: Complemental strand, 34169269 - 34169167
Alignment:
| Q |
473 |
aaaatatggagttttgaaaagaatgttccaagatttttcaacagatttgaaacgcatcaatgattttactggtagatgaagtagtatctctatctgtaaa |
572 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||| || ||| ||||||||||||| | |||||||||||||||| ||| ||||||||| ||| ||| | |
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| T |
34169269 |
aaaagatggagttttgaatagaatgttccaagatcgttgaacgcatttgaaacgcattagtgattttactggtagacgaactagtatctccatccgtaga |
34169170 |
T |
|
| Q |
573 |
tct |
575 |
Q |
| |
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||| |
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| T |
34169169 |
tct |
34169167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 482 - 601
Target Start/End: Complemental strand, 34106181 - 34106062
Alignment:
| Q |
482 |
agttttgaaaagaatgttccaagatttttcaacagatttgaaacgcatcaatgattttactggtagatgaagtagtatctctatctgtaaatctgaggtt |
581 |
Q |
| |
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|||||| || |||||||||||||| || |||| |||||||||||||||||||||| |||||| ||| || |||||||||||||| |||| ||| |
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| T |
34106181 |
agttttaaatagaatgttccaagaccgttgaacacttttgaaacgcatcaatgattttctcggtagacgaactaatatctctatctgtagatcttcagtt |
34106082 |
T |
|
| Q |
582 |
aaactcgaccagttcattct |
601 |
Q |
| |
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||||| | ||| |||||||| |
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|
| T |
34106081 |
aaacttgcccaattcattct |
34106062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 480 - 575
Target Start/End: Complemental strand, 34146856 - 34146761
Alignment:
| Q |
480 |
ggagttttgaaaagaatgttccaagatttttcaacagatttgaaacgcatcaatgattttactggtagatgaagtagtatctctatctgtaaatct |
575 |
Q |
| |
|
||||||||||| ||||||||||||||| | |||| ||||||||||||||| |||||| |||||| ||| |||||||||||| |||| |||| |
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| T |
34146856 |
ggagttttgaatagaatgttccaagatagctgaacacatttgaaacgcatcagcgattttttgggtagacgaactagtatctctatttgtagatct |
34146761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 480 - 575
Target Start/End: Complemental strand, 34159472 - 34159377
Alignment:
| Q |
480 |
ggagttttgaaaagaatgttccaagatttttcaacagatttgaaacgcatcaatgattttactggtagatgaagtagtatctctatctgtaaatct |
575 |
Q |
| |
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||||||||||| ||||||||||||||| | |||| ||||||||||||||| |||||| |||||| ||| |||||||||||| |||| |||| |
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| T |
34159472 |
ggagttttgaatagaatgttccaagatagctgaacacatttgaaacgcatcagcgattttttgggtagacgaactagtatctctatttgtagatct |
34159377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 575
Target Start/End: Complemental strand, 34115134 - 34115059
Alignment:
| Q |
500 |
ccaagatttttcaacagatttgaaacgcatcaatgattttactggtagatgaagtagtatctctatctgtaaatct |
575 |
Q |
| |
|
|||||||| || ||| |||||||||||||||| |||||| | |||||| || ||||||||||||||||| |||| |
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| T |
34115134 |
ccaagattgttgaacgcatttgaaacgcatcaacgatttttccggtagacgagttagtatctctatctgtagatct |
34115059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0620 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0620
Description:
Target: scaffold0620; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 492 - 575
Target Start/End: Complemental strand, 6661 - 6578
Alignment:
| Q |
492 |
agaatgttccaagatttttcaacagatttgaaacgcatcaatgattttactggtagatgaagtagtatctctatctgtaaatct |
575 |
Q |
| |
|
||||||||||||||| || |||| |||| ||||||||||||||||| |||||| ||| || |||||||||||||| |||| |
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|
| T |
6661 |
agaatgttccaagatcgttgaacacttttgtaacgcatcaatgattttttcggtagacgaactaatatctctatctgtagatct |
6578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 469 - 547
Target Start/End: Complemental strand, 31106795 - 31106717
Alignment:
| Q |
469 |
tcacaaaatatggagttttgaaaagaatgttccaagatttttcaacagatttgaaacgcatcaatgattttactggtag |
547 |
Q |
| |
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|||||||||| |||||||| | ||| ||||||| ||| ||| |||| ||||| |||||||||||||||| ||||||| |
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| T |
31106795 |
tcacaaaatagggagttttaatgagattgttccatgatctttgaacacatttgctacgcatcaatgattttgctggtag |
31106717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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