View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11369_high_21 (Length: 241)

Name: NF11369_high_21
Description: NF11369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11369_high_21
NF11369_high_21
[»] chr4 (3 HSPs)
chr4 (150-216)||(55857866-55857932)
chr4 (28-75)||(55857989-55858036)
chr4 (98-131)||(55857887-55857920)
[»] chr2 (3 HSPs)
chr2 (153-216)||(29276664-29276727)
chr2 (28-75)||(29276557-29276604)
chr2 (98-131)||(29276673-29276706)
[»] scaffold0175 (2 HSPs)
scaffold0175 (28-75)||(27647-27694)
scaffold0175 (170-216)||(27528-27574)


Alignment Details
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 55857932 - 55857866
Alignment:
Q  150 ggctgtcataactttaagtctaagctaagatcataattacctaaatgtctcatatacttaccgctaa 216  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||    
T  55857932 ggctgtcattactttaagtttaagctaagatcataattacctaaatgtctcaaatacttactgctaa 55857866  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 55858036 - 55857989
Alignment:
Q  28 ttatcaaaatccatggaatatttgatttcaaacaatgaacacatttca 75  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  55858036 ttatcaaaatccatggaatatttgatttcaaacaatgtacacatttca 55857989  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 55857920 - 55857887
Alignment:
Q  98 tttaagtttaagctaagatcataattatctaaat 131  Q
    ||||||||||||||||||||||||||| ||||||    
T  55857920 tttaagtttaagctaagatcataattacctaaat 55857887  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 29276664 - 29276727
Alignment:
Q  153 tgtcataactttaagtctaagctaagatcataattacctaaatgtctcatatacttaccgctaa 216  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||    
T  29276664 tgtcattactttaagtttaagctaagatcataattacctaaatgtctcaaatacttactgctaa 29276727  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 29276557 - 29276604
Alignment:
Q  28 ttatcaaaatccatggaatatttgatttcaaacaatgaacacatttca 75  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29276557 ttatcaaaatccatggaatatttgatttcaaacaatgtacacatttca 29276604  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 29276673 - 29276706
Alignment:
Q  98 tttaagtttaagctaagatcataattatctaaat 131  Q
    ||||||||||||||||||||||||||| ||||||    
T  29276673 tttaagtttaagctaagatcataattacctaaat 29276706  T

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Target: scaffold0175 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 27694 - 27647
Alignment:
Q  28 ttatcaaaatccatggaatatttgatttcaaacaatgaacacatttca 75  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  27694 ttatcaaaatccatgaaatattttatttcaaacaatgtacacatttca 27647  T

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Target: scaffold0175; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 27574 - 27528
Alignment:
Q  170 taagctaagatcataattacctaaatgtctcatatacttaccgctaa 216  Q
    |||| ||||||||||| ||||||||||||||| |||||||| |||||    
T  27574 taaggtaagatcataactacctaaatgtctcaaatacttactgctaa 27528  T

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