View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11369_high_23 (Length: 238)
Name: NF11369_high_23
Description: NF11369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11369_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 49993426 - 49993645
Alignment:
| Q |
4 |
gaaaatttcactaactctatattagaaggtccaaatttaatttcatgtatcacattaggccttcttataaaacccaaaatcacacccaaaacaaatacta |
103 |
Q |
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| T |
49993426 |
gaaaatttcactaactctatattagaaggtccaaatttaatttcatgtatcacattaggccttcttataaaacccaaaatcacacccaaaacaaatacta |
49993525 |
T |
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| Q |
104 |
taaaagcagaaggtagtgaaaaaacaatctttttaaatgatctaccactcttttttctctcattcccttcaattgaatcacccaattcttcctcagtttc |
203 |
Q |
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| T |
49993526 |
taaaagcagaaggtagtgaaaaaacaatctttttaaatgatctaccactcttttttctctcattcccttcaattgaatcacccaattcttcctcagtttc |
49993625 |
T |
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| Q |
204 |
atcaaactcattttcctttt |
223 |
Q |
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| T |
49993626 |
atcaaactcattttcctttt |
49993645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 1875520 - 1875414
Alignment:
| Q |
31 |
ggtccaaatttaatttcatgtatcacattaggccttcttataaaacccaaaatcacacccaaaacaaatactataaaagcagaaggtagtgaaaaaacaa |
130 |
Q |
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| T |
1875520 |
ggtccaaacttaatttcatgcaccacattaggcctttttatgaatgccaaaataacacctaaaacaaagattacaaaagcagaaggaagtgaaaaaagaa |
1875421 |
T |
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| Q |
131 |
tcttttt |
137 |
Q |
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| T |
1875420 |
tcttttt |
1875414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 1807928 - 1807812
Alignment:
| Q |
19 |
tctatattagaaggtccaaatttaatttcatgtatcacattaggccttcttataaaacccaaaatcacacccaaaacaaatactataaaagcagaaggta |
118 |
Q |
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| T |
1807928 |
tctattttagagggtccaaatttaatttcatgcacaacttcacttcttcttataaaaaccaaaactattcccaatacaaagactataaaagcagaaggaa |
1807829 |
T |
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| Q |
119 |
gtgaaaaaacaatcttt |
135 |
Q |
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||||||||| ||||||| |
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| T |
1807828 |
gtgaaaaaataatcttt |
1807812 |
T |
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