View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11369_high_3 (Length: 584)
Name: NF11369_high_3
Description: NF11369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11369_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 375 - 577
Target Start/End: Complemental strand, 48250909 - 48250706
Alignment:
| Q |
375 |
cgaggaggaagataaggcaaagcagagcagcgagtaacgttggtggttgtaaatagccgatgagaaactaacactgtgcctgcatttgctgcaaccgcca |
474 |
Q |
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| T |
48250909 |
cgaggaggaagataaggcaaagcagagcagcgagtaacgttggtggttgtcaatagccgatgaggaactaacactgtgcctgcacttgctgcaaccgcca |
48250810 |
T |
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| Q |
475 |
ttgtctctcacttttcttcactgttatcctt-ttttcctatgttaagaattaagattcaatgtttttgtttgtttgaggaaaatagagaaaccacccttt |
573 |
Q |
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| T |
48250809 |
ttgtctctcacttttcttcactgttatcctttttttcctatgttaagaattaagattcaatgtttttgtttgtttgaggaaaatagagaaaccacccttt |
48250710 |
T |
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| Q |
574 |
gctt |
577 |
Q |
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|||| |
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| T |
48250709 |
gctt |
48250706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 48251299 - 48251026
Alignment:
| Q |
18 |
ctagtctgatgcagagaaaacttacgggattctgaaaagaaagaaacagtaacataatttaggaaataaattgaaatacatatataaacnnnnnnngaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| |
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| T |
48251299 |
ctagtctgatgcagagaaaacttacgggattctgaaaagaaagaaacagtaacataatttaggaaataaattgaaatacataaacaaa--aaaaaagaag |
48251202 |
T |
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| Q |
118 |
cagatgaactagtagcttgaaatgagcattgaaagta------gaacttgaacttgtattcagctacatgttaacttaaagtcacactggaatttggatt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48251201 |
cagatgaactagtagcttgaaatgagcattgaaagtagaacttgaacttgaacttgtattcagctacatgttaacttaaagtcaaactggaatttggatt |
48251102 |
T |
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| Q |
212 |
-----------ttcaagatgatagattagatagcttatgaaaacaaattatattagcttaaacgaaaatataagct |
276 |
Q |
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| T |
48251101 |
ttcataagctcttcaagatgatagattagatagcttatgaaaacaaattatattagcttaaacgaaaatataagct |
48251026 |
T |
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