View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11369_low_11 (Length: 364)
Name: NF11369_low_11
Description: NF11369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11369_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 1223992 - 1224157
Alignment:
| Q |
12 |
gagatgaacaatggaaaagagaaatacatgcatttcaccgttctatttacaaaataattagaaatgattttgatcaagcacattacaagttagtttcatt |
111 |
Q |
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| T |
1223992 |
gagaagaacaatggaaaagagaaatacatgtatttcactgttctatttacaaaataattagaaatgattttgatcaagcacattacaagttagtttcatt |
1224091 |
T |
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| Q |
112 |
ttaacatctcccttaaactcaaatagttgttgatgcaactgttttgagttcagaaactgaggtaca |
177 |
Q |
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| T |
1224092 |
ttaacatctcccttaaactcaaatagttgttgatgcaactgttttgagttcggaaactgaggtaca |
1224157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 193 - 343
Target Start/End: Original strand, 1224144 - 1224294
Alignment:
| Q |
193 |
gaaactgaggtacaaaatcttgtccgatgatgtgcctaggtgtagcagtcaattggcttgtcatgcatatgcgcaacaaatgaaatggcattcaattgct |
292 |
Q |
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| T |
1224144 |
gaaactgaggtacaaaatattgtccgatgatgtgcctaggtgtagcagtcagctggcttgtcatgcgtatgcacaacgaatgaaatggcattcaattgct |
1224243 |
T |
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| Q |
293 |
catggaaaagttcattgtgtgatctttggattacacatccgtttttgcagt |
343 |
Q |
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| T |
1224244 |
catggaaaaggtcattgtgtgatctttggattacacatctgtttttgcagt |
1224294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 1201848 - 1201676
Alignment:
| Q |
17 |
gaacaatggaaaagagaaatacatgcatttcacc----gttctatttacaaaataattagaaatgattttgat---------caagcacattacaagtta |
103 |
Q |
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| T |
1201848 |
gaacaatggaaaagagaaatacacgtatttcattcattgttctattttcaaattaattagagatgattttgatatcgatgatcaagcacattacaagtta |
1201749 |
T |
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| Q |
104 |
gtttcattttaacatctcccttaaactcaaatagttgttgatgcaactgttttgagttcagaaactgaggtac |
176 |
Q |
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| T |
1201748 |
atttcattttaacatctcccttaaactcaaatagttgtagatgcaactgttttgagttcgaaaactgaggtac |
1201676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 194 - 319
Target Start/End: Complemental strand, 1201687 - 1201562
Alignment:
| Q |
194 |
aaactgaggtacaaaatcttgtccgatgatgtgcctaggtgtagcagtcaattggcttgtcatgcatatgcgcaacaaatgaaatggcattcaattgctc |
293 |
Q |
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| T |
1201687 |
aaactgaggtacgaaatcttgtccgatgatgtgctttggtgcagcagtcagctggcttgtcattcgtatgtgcaacaaatgaaacagtattcaatttctc |
1201588 |
T |
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| Q |
294 |
atggaaaagttcattgtgtgatcttt |
319 |
Q |
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| T |
1201587 |
atggaaaacgtcattctctgatcttt |
1201562 |
T |
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