View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11369_low_12 (Length: 331)
Name: NF11369_low_12
Description: NF11369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11369_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 95 - 315
Target Start/End: Original strand, 28216625 - 28216845
Alignment:
| Q |
95 |
gattgccccttgagcatatctacacttttcttcaagccagcaacctcctcctcaaacaccttgttattttcattctttttgtccaactgagtcagagcag |
194 |
Q |
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| T |
28216625 |
gatttccccttgagcgcatctacacttttcttcaagccaacaacctcctcctcaaatgccttgttattttcagtctttttctccaactgagtcagagcag |
28216724 |
T |
|
| Q |
195 |
tctgttcttcctccaatctcttatttaccttcaatatttgtttcttcatatctccaagaatatcattggctatttttaatttttctttggttgcattcag |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28216725 |
tctgttcttcctccaatctcttatttaccttcaatatttgtttcttcatatctccaagaatatcattggctattttcaatttttctttggttgcattcag |
28216824 |
T |
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| Q |
295 |
ttcgtctcggcggttgctttc |
315 |
Q |
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||||||||||||||||||||| |
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| T |
28216825 |
ttcgtctcggcggttgctttc |
28216845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 93 - 315
Target Start/End: Original strand, 28237495 - 28237717
Alignment:
| Q |
93 |
cggattgccccttgagcatatctacacttttcttcaagccagcaacctcctcctcaaacaccttgttattttcattctttttgtccaactgagtcagagc |
192 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| |
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| T |
28237495 |
cggatagccccttgagcgtatctacacttttcttcaagccaacaacctcctcctcaaacgccttgttattttcagtctttttctccaactgagtcagagc |
28237594 |
T |
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| Q |
193 |
agtctgttcttcctccaatctcttatttaccttcaatatttgtttcttcatatctccaagaatatcattggctatttttaatttttctttggttgcattc |
292 |
Q |
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| T |
28237595 |
agtttgttcttcctccaatctcttatttaccttcaatatttgtttcttcatatctccaagaatatcattggctattttcaatttttctttggttgcattc |
28237694 |
T |
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| Q |
293 |
agttcgtctcggcggttgctttc |
315 |
Q |
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||||||||| ||| ||||||||| |
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| T |
28237695 |
agttcgtcttggcagttgctttc |
28237717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 94 - 312
Target Start/End: Original strand, 28232667 - 28232885
Alignment:
| Q |
94 |
ggattgccccttgagcatatctacacttttcttcaagccagcaacctcctcctcaaacaccttgttattttcattctttttgtccaactgagtcagagca |
193 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||||||||||| |||||||||||||||||| |
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| T |
28232667 |
ggatagcccctttagcatatctacacttttcttcaagccaacctcctcctcctcaaacgctttgttattttcattctttttctccaactgagtcagagca |
28232766 |
T |
|
| Q |
194 |
gtctgttcttcctccaatctcttatttaccttcaatatttgtttcttcatatctccaagaatatcattggctatttttaatttttctttggttgcattca |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |||||||||||||||| |||||| ||||||||||| ||| |
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| T |
28232767 |
gtctgttcttcctccaatctcttatttaccttcaatatgtgcttcttcatatccccaagagtatcattggctattttcaattttcctttggttgcaatca |
28232866 |
T |
|
| Q |
294 |
gttcgtctcggcggttgct |
312 |
Q |
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|||||||| ||| |||||| |
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| T |
28232867 |
gttcgtcttggcagttgct |
28232885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 28216396 - 28216488
Alignment:
| Q |
1 |
tggaaataggacatgaacttgttctatggccttatcaaaaccatctttatagcgaaaggcagtatctaacttcaaatcctcaatttccatatc |
93 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28216396 |
tggaaataggacatgaacttgttctatggccttatcaaaaccatcttgatagcgaaaggcagtatctaacttcaaatcctcaatttccatatc |
28216488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 28232376 - 28232468
Alignment:
| Q |
1 |
tggaaataggacatgaacttgttctatggccttatcaaaaccatctttatagcgaaaggcagtatctaacttcaaatcctcaatttccatatc |
93 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||| |||| |||||||||||||||||||||||| |
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| T |
28232376 |
tggaaataggatgtgaacttgttctatggccttatcaaaaccatcttgatagcgcaaggcagcgtctaccttcaaatcctcaatttccatatc |
28232468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 28237269 - 28237405
Alignment:
| Q |
2 |
ggaaataggacatgaacttgttctatggccttatcaaaaccatctttatagcgaaaggcagtatctaacttcaaatcctcaatttccatat--------- |
92 |
Q |
| |
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|||||||||| |||||||||||||||||||| ||||||||| ||| ||||||||| |||| |||| |||||| |||||||||||||||| |
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| T |
28237269 |
ggaaataggatgtgaacttgttctatggccttgtcaaaaccaccttgatagcgaaatgcagcgtctatcttcaactcctcaatttccatatccttttctg |
28237368 |
T |
|
| Q |
93 |
cggattgccccttgagcatatctacacttttcttcaa |
129 |
Q |
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||||||||||||||||| |||||| ||||||||||| |
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| T |
28237369 |
cggattgccccttgagcgtatctatgcttttcttcaa |
28237405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 28232603 - 28232639
Alignment:
| Q |
93 |
cggattgccccttgagcatatctacacttttcttcaa |
129 |
Q |
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||||| ||||||||||||||||||||||||||||||| |
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| T |
28232603 |
cggatagccccttgagcatatctacacttttcttcaa |
28232639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 28232540 - 28232577
Alignment:
| Q |
93 |
cggattgccccttgagcatatctacacttttcttcaag |
130 |
Q |
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|||||| ||||||||||||||||||||||| ||||||| |
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| T |
28232540 |
cggatttccccttgagcatatctacactttccttcaag |
28232577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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